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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 326ChIP-seq
  • 5MeRIP-seq
  • 3single cell RNA-seq
Assay category
  • 326DNA binding
  • 3Transcription
Target of assay
  • 992histone modification
  • 991histone
  • 501narrow histone mark
  • 495transcription factor
  • 489broad histone mark
  • 334control
  • 112RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 71November, 2017
  • 48August, 2017
  • 39October, 2019
  • 29October, 2018
  • 23May, 2019
  • 23May, 2020
  • 16December, 2017
  • 14April, 2019
  • 12August, 2021
  • 9May, 2021
  • 8February, 2018
  • 8June, 2019
  • 6November, 2018
  • 5November, 2020
  • 4December, 2018
  • 4January, 2019
  • 4September, 2017
  • 3February, 2021
  • 3July, 2019
  • 3October, 2017
  • 2November, 2019
Available data
  • 306bam
  • 168fastq
  • 68tagAlign
  • 23bigWig
  • bed bed3+
  • 3tsv
Organism
  • 333Homo sapiens
Biosample type
  • 184tissue
  • 83cell line
  • 35primary cell
  • 32in vitro differentiated cells
Organ
  • 107liver
  • 51pancreas
  • 34connective tissue
  • 31brain
  • 30epithelium
  • 24adipose tissue
  • 22vasculature
  • 21blood vessel
  • 20heart
  • 17limb
  • 12kidney
  • 11nerve
  • 9artery
  • 8spleen
  • 6blood
  • 6bodily fluid
  • 6embryo
  • 6musculature of body
  • 2vein
  • 1eye
Project
  • 334AMP
Genome assembly (visualization)
  • 23hg19
  • 3GRCh38
Lab
  • 317AMP-T2D consortium
  • 8Kyle Gaulton, UCSD
  • 5Rohit N. Kulkarni, M.D., Ph.D.
  • 4Bing Ren, UCSD
Audit category:
  • 15inconsistent ontology term
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

334 results

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Clear Filters
ChIP-seq
MeRIP-seq
single cell RNA-seq
tissue
liver42
islet of Langerhans112
tibial nerve11
subcutaneous adipose tissue10
body of pancreas9
cell line
HepG260
GM128786
Panc16
EndoC_BH123
smooth muscle cell of the coronary artery2
primary cell
pancreatic alpha cell6
pancreatic beta cell6
CD8-positive, alpha-beta T cell3
cardiac fibroblast2
cerebellar granule cell2
in vitro differentiated cells
adipocyte7
neural progenitor cell7
embryonic stem cell6
pancreatic endoderm4
Hepatic endoderm2
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