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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 495ChIP-seq
Assay category
  • 495DNA binding
Target of assay
  • 992histone modification
  • 991histone
  • 501narrow histone mark
  • 495transcription factor
  • 489broad histone mark
  • 334control
  • 112RNA binding protein
  • 89recombinant protein
  • 36chromatin remodeller
  • 5nucleotide modification
  • 5other context
  • 5other post-translational modification
Date released
  • 244November, 2017
  • 64November, 2018
  • 42December, 2017
  • 28August, 2017
  • 28December, 2018
  • 16May, 2021
  • 15October, 2018
  • 14January, 2019
  • 11August, 2021
  • 7October, 2019
  • 6April, 2019
  • 5February, 2021
  • 5May, 2019
  • 5May, 2024
  • 4June, 2019
  • 1November, 2019
Available data
  • 496bigWig
  • 485bam
  • 469bed narrowPeak
  • 454fastq
  • 405bigBed narrowPeak
  • 49bed broadPeak
  • 49bigBed broadPeak
  • bed bed3+
  • 9tagAlign
  • 3tar
Organism
  • 495Homo sapiens
Biosample type
  • 361cell line
  • 81tissue
  • 43in vitro differentiated cells
  • 10primary cell
Organ
  • 336liver
  • 51blood
  • 51bodily fluid
  • 30connective tissue
  • 17heart
  • 13adipose tissue
  • 12pancreas
  • 10kidney
  • 9epithelium
  • 9vasculature
  • 8blood vessel
  • 6spleen
  • 5artery
  • 3brain
  • 3embryo
  • 1eye
Project
  • 495AMP
Genome assembly (visualization)
  • 468hg19
  • 429GRCh38
Lab
  • 467AMP-T2D consortium
  • 12Kyle Gaulton, UCSD
  • 11Bing Ren, UCSD
  • 5Patrick T. Ellinor, Broad
Audit category:
  • 28inconsistent control
  • 14inconsistent ontology term
Audit category:
  • 25missing controlled_by
Audit category:
  • 21inconsistent control read length
  • 8inconsistent control run_type
files.file_type!
  • bed bed3+
BIOSAMPLE
ASSAY

495 results

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Clear Filters
ChIP-seq
cell line
HepG2297
GM1287851
smooth muscle cell of the coronary artery4
RCC 7860 HIF1a re-expression3
RCC 7860 HIF2a over-expression2
tissue
liver35
body of pancreas9
white adipose tissue8
spleen6
heart left ventricle5
in vitro differentiated cells
adipocyte16
embryonic stem cell12
cardiomyocytes3
pancreatic endoderm3
Posterior foregut2
primary cell
skeletal muscle myoblast2
astrocyte of the cerebellum1
brain microvascular endothelial cell1
cardiac fibroblast1
cardiac muscle cell1
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