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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
100
ChIP-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
single cell RNA-seq
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
100
DNA binding
24
Transcription
4
DNA accessibility
2
DNA methylation
Target of assay
88
histone
88
histone modification
63
narrow histone mark
25
broad histone mark
12
control
3
RNA binding protein
3
transcription factor
Date released
48
October, 2019
28
May, 2019
25
November, 2017
15
July, 2019
12
February, 2020
2
March, 2020
2
October, 2017
Available data
243
bam
222
bigWig
203
bed narrowPeak
127
bigBed narrowPeak
tagAlign
47
bed broadPeak
38
bigBed broadPeak
bed bed3+
26
tsv
21
fastq
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3
1
tagAlign bed3+
Organism
132
Homo sapiens
Biosample type
119
tissue
13
primary cell
Organ
898
pancreas
694
liver
629
connective tissue
499
epithelium
477
adipose tissue
357
heart
276
kidney
217
vasculature
213
blood vessel
155
bone element
132
brain
131
artery
86
limb
69
blood
69
bodily fluid
57
eye
47
musculature of body
41
nerve
34
embryo
24
spleen
20
lung
20
vein
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
132
AMP
Genome assembly (visualization)
103
GRCh38
95
hg19
Lab
132
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
files.file_type!
bed bed3
bed bed3+
hdf5
tagAlign
BIOSAMPLE
ASSAY
132 results
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ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
single cell RNA-seq
RRBS
pCHi-C
FAIRE-seq
tissue
temporal lobe
15
1
1
angular gyrus
13
brain
6
1
1
layer of hippocampus
8
middle frontal area 46
6
+ See 52 more…
primary cell
choroid plexus epithelial cell
3
1
astrocyte of the cerebellum
3
brain microvascular endothelial cell
3
cerebellar granule cell
2
Purkinje cell
1
See all biosamples
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