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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
51
ChIP-seq
8
ATAC-seq
7
total RNA-seq
4
Hi-C
1
WGBS
Assay category
51
DNA binding
8
DNA accessibility
7
Transcription
4
3D chromatin structure
1
DNA methylation
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
narrow histone mark
Date released
52
October, 2019
6
February, 2021
5
July, 2019
5
May, 2019
3
February, 2020
Available data
100
bam
78
bed narrowPeak
77
bigWig
70
bigBed narrowPeak
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
1
bed bedMethyl
1
bigBed bedMethyl
Organism
71
Homo sapiens
Biosample type
71
tissue
Organ
850
pancreas
719
liver
618
connective tissue
473
adipose tissue
epithelium
323
heart
261
kidney
197
vasculature
194
blood vessel
155
bone element
133
brain
131
artery
71
limb
68
blood
68
bodily fluid
54
eye
49
musculature of body
33
nerve
27
embryo
22
spleen
20
lung
14
vein
12
skeleton
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
71
AMP
Genome assembly (visualization)
47
GRCh38
46
hg19
Lab
71
AMP-T2D consortium
files.file_type!
bed bed3
bed bed3+
organ_slims!
epithelium
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
71 results
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ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
WGBS
tissue
tibial nerve
27
1
5
tibial artery
19
1
1
muscle of leg
5
1
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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