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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
11
total RNA-seq
10
ATAC-seq
4
Hi-C
Assay category
66
DNA binding
46
DNA accessibility
11
Transcription
4
3D chromatin structure
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
8
February, 2021
7
May, 2019
4
February, 2023
4
July, 2019
3
February, 2020
Available data
116
bam
94
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
7
tsv
bed bed3
4
txt
bed bedMethyl
1
bigBed bedMethyl
Organism
127
Homo sapiens
Biosample type
127
tissue
Organ
933
pancreas
785
liver
674
connective tissue
513
epithelium
488
adipose tissue
382
heart
350
kidney
283
brain
232
vasculature
227
blood vessel
155
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
21
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
127
AMP
Genome assembly (visualization)
98
hg19
97
GRCh38
Lab
127
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bed3
bed bedMethyl
bedpe bed3+
BIOSAMPLE
ASSAY
127 results
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ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
Hi-C
tissue
tibial nerve
35
2
5
1
tibial artery
23
2
1
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
1
4
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