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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
17
ChIP-seq
8
ATAC-seq
4
total RNA-seq
2
DNase-seq
1
FAIRE-seq
1
Hi-C
Assay category
17
DNA binding
11
DNA accessibility
4
Transcription
1
3D chromatin structure
Target of assay
15
histone
15
histone modification
9
broad histone mark
6
narrow histone mark
2
control
Date released
21
October, 2019
8
February, 2021
4
February, 2023
Available data
28
bam
21
bed narrowPeak
15
bigWig
13
bigBed narrowPeak
bed bed3
4
bed broadPeak
4
bigBed broadPeak
4
txt
2
bed bed3+
2
hic
bedpe bed3+
1
tar
Organism
33
Homo sapiens
Biosample type
21
primary cell
12
tissue
Organ
933
pancreas
785
liver
674
connective tissue
513
epithelium
488
adipose tissue
382
heart
350
kidney
283
brain
232
vasculature
227
blood vessel
155
bone element
141
artery
121
limb
90
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
21
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
33
AMP
Genome assembly (visualization)
24
hg19
20
GRCh38
Lab
33
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3
bed bedMethyl
bedpe bed3+
BIOSAMPLE
ASSAY
33 results
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ChIP-seq
ATAC-seq
total RNA-seq
DNase-seq
FAIRE-seq
Hi-C
primary cell
endothelial cell of umbilical vein
17
2
1
1
tissue
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
distal epiphysis of tibia
1
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