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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
12
ChIP-seq
5
RRBS
4
Hi-C
2
total RNA-seq
1
pCHi-C
1
single cell RNA-seq
1
snATAC-seq
Assay category
12
DNA binding
5
DNA methylation
4
3D chromatin structure
3
Transcription
1
DNA accessibility
Target of assay
6
control
6
histone
6
histone modification
4
broad histone mark
2
narrow histone mark
Date released
13
August, 2017
5
July, 2019
2
February, 2020
2
June, 2019
2
May, 2022
1
March, 2020
1
May, 2019
Available data
bigWig
60
bed narrowPeak
57
bam
47
bigBed narrowPeak
46
bed broadPeak
34
bed bed3+
33
bigBed broadPeak
15
tagAlign
9
tsv
4
bed bedMethyl
4
bigBed bedMethyl
bedpe bed3+
2
fastq
2
hic
1
txt
Organism
26
Homo sapiens
Biosample type
23
tissue
3
primary cell
Organ
316
pancreas
223
kidney
epithelium
166
heart
166
liver
108
connective tissue
97
bone element
79
vasculature
78
blood vessel
65
adipose tissue
63
brain
56
artery
55
eye
31
limb
26
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
12
skeleton
9
spleen
8
embryo
6
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
26
AMP
Genome assembly (visualization)
4
hg19
Lab
26
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed bed3
bedpe bed3+
bigWig
organ_slims!
epithelium
BIOSAMPLE
ASSAY
26 results
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ChIP-seq
RRBS
Hi-C
total RNA-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue
9
4
1
1
gastrocnemius medialis
4
1
left ventricle myocardium
1
muscle of leg
1
psoas muscle
1
primary cell
skeletal muscle cell
1
1
skeletal muscle satellite cell
1
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