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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
398
total RNA-seq
90
ChIP-seq
6
ATAC-seq
6
WGBS
4
DNase-seq
3
small RNA-seq
1
FAIRE-seq
1
Hi-C
1
RNA microarray
1
pCHi-C
Assay category
401
Transcription
90
DNA binding
11
DNA accessibility
6
DNA methylation
1
3D chromatin structure
Target of assay
47
histone
47
histone modification
29
broad histone mark
26
control
18
narrow histone mark
17
transcription factor
5
RNA binding protein
Date released
386
February, 2021
57
August, 2017
23
October, 2018
22
October, 2019
12
July, 2019
2
February, 2020
1
August, 2021
1
February, 2023
1
January, 2018
1
June, 2019
1
March, 2020
1
May, 2023
1
November, 2018
1
November, 2019
1
October, 2017
Available data
462
bam
440
bigWig
401
tsv
44
fastq
26
bed narrowPeak
23
bigBed narrowPeak
8
bed bed3+
8
tagAlign
7
bed broadPeak
6
bigBed broadPeak
2
bed bedMethyl
bedpe bed3+
2
bigBed bedMethyl
2
hic
1
tar
Organism
510
Homo sapiens
Biosample type
488
tissue
23
primary cell
Organ
939
pancreas
788
liver
677
connective tissue
519
epithelium
490
adipose tissue
390
heart
354
kidney
285
brain
234
vasculature
228
blood vessel
155
bone element
141
artery
122
limb
94
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
21
vein
20
lung
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
511
AMP
Genome assembly (visualization)
442
hg19
436
GRCh38
Lab
511
AMP-T2D consortium
Audit category:
1
audit script error
1
inconsistent ontology term
Audit category:
12
missing controlled_by
files.file_type!
bed bed3
bedpe bed3+
organ_slims!
ureter
BIOSAMPLE
ASSAY
511 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
DNase-seq
small RNA-seq
FAIRE-seq
Hi-C
RNA microarray
pCHi-C
tissue
adipose tissue
382
2
3
3
1
subcutaneous abdominal adipose tissue
36
3
subcutaneous adipose tissue
7
12
1
1
1
omental fat pad
5
11
1
2
1
white adipose tissue
12
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primary cell
endothelial cell of umbilical vein
17
2
1
1
mesenchymal stem cell of adipose
1
1
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