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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
123
ChIP-seq
21
ATAC-seq
5
WGBS
4
Hi-C
3
pCHi-C
3
small RNA-seq
2
RRBS
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
123
DNA binding
22
DNA accessibility
7
DNA methylation
4
3D chromatin structure
1
DNA sequencing
Target of assay
80
control
24
transcription factor
19
histone modification
18
histone
10
narrow histone mark
8
broad histone mark
3
RNA binding protein
1
recombinant protein
Date released
144
May, 2020
63
November, 2017
40
May, 2022
31
August, 2021
28
August, 2017
13
December, 2017
10
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
November, 2018
1
December, 2018
1
February, 2020
Available data
681
bam
622
bigWig
465
fastq
441
bed narrowPeak
bigBed narrowPeak
174
tsv
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
3
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
bed bed3
1
csv
1
hdf5
1
vcf
Organism
355
Homo sapiens
Biosample type
242
tissue
104
cell line
8
primary cell
1
in vitro differentiated cells
Organ
842
pancreas
628
connective tissue
473
adipose tissue
441
epithelium
355
liver
293
heart
250
kidney
155
bone element
147
vasculature
145
blood vessel
110
artery
91
brain
55
eye
38
limb
37
embryo
34
musculature of body
20
lung
17
nerve
15
blood
15
bodily fluid
12
skeleton
12
spleen
9
vein
5
gonad
5
ovary
2
intestine
2
pericardium
2
thymus
1
adrenal gland
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
355
AMP
Genome assembly (visualization)
237
hg19
182
GRCh38
Lab
284
AMP-T2D consortium
40
Karen Mohlke, UNC
31
Bing Ren, UCSD
Audit category:
1
inconsistent ontology term
Audit category:
1
missing controlled_by
files.file_type!
bed bed3
bigBed narrowPeak
tagAlign
organ_slims!
bone marrow
BIOSAMPLE
ASSAY
355 results
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total RNA-seq
ChIP-seq
ATAC-seq
WGBS
Hi-C
pCHi-C
small RNA-seq
RRBS
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
37
20
3
1
1
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
82
1
2
2
2
1
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
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