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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
29
ChIP-seq
Assay category
29
DNA binding
Target of assay
92
control
29
histone
29
histone modification
19
narrow histone mark
17
transcription factor
10
broad histone mark
2
RNA binding protein
Date released
168
August, 2017
140
May, 2021
138
October, 2019
35
May, 2024
32
September, 2018
27
May, 2020
20
August, 2021
16
February, 2018
15
November, 2017
14
December, 2017
10
November, 2019
6
October, 2017
3
March, 2020
1
April, 2019
Available data
106
bam
105
bigWig
104
bed narrowPeak
bigBed narrowPeak
67
tagAlign
49
fastq
23
bed broadPeak
17
bigBed broadPeak
10
bed bed3+
Organism
29
Homo sapiens
Biosample type
13
tissue
12
in vitro differentiated cells
2
cell line
2
stem cell
Organ
13
brain
6
embryo
2
epithelium
2
liver
Project
29
AMP
Genome assembly (visualization)
16
hg19
13
GRCh38
Lab
29
AMP-T2D consortium
Audit category:
2
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
9
inconsistent control read length
files.file_type!
bed bed3
bigBed narrowPeak
BIOSAMPLE
ASSAY
29 results
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ChIP-seq
tissue
cingulate gyrus
6
layer of hippocampus
3
substantia nigra
2
caudate nucleus
1
middle frontal area 46
1
in vitro differentiated cells
pancreatic endoderm
4
Hepatic endoderm
2
Posterior foregut
2
definitive endodermal cell
2
primitive gut cell
2
cell line
HepG2
2
stem cell
hESC
2
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