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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
ATAC-seq
23
ChIP-seq
3
Hi-C
3
total RNA-seq
1
WGBS
1
pCHi-C
Assay category
43
DNA accessibility
23
DNA binding
3
3D chromatin structure
3
Transcription
1
DNA methylation
Target of assay
20
control
3
histone
3
histone modification
2
broad histone mark
1
narrow histone mark
Date released
35
February, 2023
11
May, 2019
11
October, 2019
10
February, 2021
August, 2021
3
February, 2020
3
March, 2020
1
July, 2019
Available data
180
bam
bigWig
129
bed narrowPeak
79
bigBed narrowPeak
62
tsv
13
bed broadPeak
13
bigBed broadPeak
11
bed bed3+
6
tagAlign
3
fastq
3
hic
2
bedpe bed3+
2
hdf5
1
bed bedMethyl
1
bigBed bedMethyl
1
tar
Organism
74
Homo sapiens
Biosample type
57
tissue
10
cell line
7
primary cell
Organ
319
pancreas
220
epithelium
150
liver
106
connective tissue
bone element
93
kidney
77
heart
75
vasculature
74
blood vessel
65
adipose tissue
63
brain
55
eye
54
artery
31
limb
28
musculature of body
20
lung
14
blood
14
bodily fluid
12
nerve
12
skeleton
9
spleen
8
embryo
7
vein
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
74
AMP
Genome assembly (visualization)
43
GRCh38
11
hg19
Lab
74
AMP-T2D consortium
Audit category:
1
audit script error
files.file_type!
bed bed3
bigWig
month_released!
August, 2021
organ_slims!
bone element
BIOSAMPLE
ASSAY
74 results
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ATAC-seq
ChIP-seq
Hi-C
total RNA-seq
WGBS
pCHi-C
tissue
coronary artery
35
2
1
tibial artery
5
1
aorta
2
1
1
1
ascending aorta
3
1
thoracic aorta
4
cell line
smooth muscle cell of the coronary artery
8
2
primary cell
endothelial cell of umbilical vein
5
2
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