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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
27
snATAC-seq
18
single cell RNA-seq
16
ATAC-seq
3
ChIP-seq
3
snDrop-seq
1
pCHi-C
Assay category
43
DNA accessibility
18
Transcription
3
DNA binding
Target of assay
3
control
Date released
266
August, 2021
152
February, 2021
131
February, 2023
100
May, 2022
96
October, 2019
81
May, 2020
78
May, 2021
72
November, 2017
67
August, 2017
47
September, 2023
41
March, 2020
40
September, 2020
25
November, 2019
23
February, 2020
22
May, 2019
19
April, 2020
19
December, 2017
16
January, 2021
16
July, 2019
15
April, 2019
14
May, 2023
11
October, 2018
9
October, 2017
8
February, 2018
8
November, 2018
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
December, 2019
4
January, 2019
4
July, 2018
4
November, 2020
3
June, 2019
1
August, 2022
1
October, 2022
1
September, 2018
Available data
95
bam
89
txt
78
tsv
bigWig
39
fastq
22
bed narrowPeak
8
tagAlign
6
csv
bed bed3
1
bed bed3+
Organism
152
Homo sapiens
Biosample type
101
tissue
39
primary cell
12
cell line
Organ
92
bone element
10
artery
10
blood vessel
10
heart
10
vasculature
8
kidney
8
skeleton
epithelium
6
limb
6
pancreas
connective tissue
2
liver
Project
113
AMP
39
HPAP
Genome assembly (visualization)
17
hg19
16
GRCh38
Lab
113
AMP-T2D consortium
39
Klaus Kaestner, Upenn
Audit category:
84
inconsistent ontology term
32
audit script error
files.file_type!
bed bed3
bigWig
organ_slims!
connective tissue
epithelium
BIOSAMPLE
ASSAY
152 results
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RNA microarray
snATAC-seq
single cell RNA-seq
ATAC-seq
ChIP-seq
snDrop-seq
pCHi-C
tissue
bone element
84
kidney
5
distal epiphysis
1
distal epiphysis of femur
1
distal epiphysis of humerus
1
+ See 9 more…
primary cell
Langerhans cell
27
12
cell line
smooth muscle cell of the coronary artery
8
2
HepG2
1
iPSC derived cell line
1
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