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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
41
single cell RNA-seq
16
total RNA-seq
8
DNase-seq
7
WGBS
3
ATAC-seq
1
FAIRE-seq
Assay category
70
DNA binding
57
Transcription
12
DNA accessibility
7
DNA methylation
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
406
November, 2017
294
October, 2019
225
May, 2021
200
June, 2019
200
May, 2022
197
August, 2017
191
August, 2021
170
February, 2023
152
May, 2020
149
February, 2021
120
May, 2019
94
December, 2017
87
November, 2018
80
April, 2019
59
September, 2020
51
October, 2018
47
September, 2018
47
September, 2023
41
July, 2019
40
May, 2024
40
November, 2019
35
December, 2018
25
January, 2019
24
February, 2018
22
October, 2017
19
April, 2020
19
March, 2020
16
January, 2021
14
May, 2023
11
September, 2017
10
November, 2020
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
July, 2018
4
October, 2022
1
August, 2022
1
December, 2019
Available data
128
fastq
86
bam
82
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
19
zippedFastqFolder
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
7
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
146
Homo sapiens
Biosample type
61
cell line
60
primary cell
25
tissue
Organ
53
liver
26
pancreas
19
epithelium
15
blood
15
bodily fluid
9
spleen
2
brain
1
adipose tissue
connective tissue
Project
87
AMP
59
HPAP
Genome assembly (visualization)
81
GRCh38
70
hg19
Lab
87
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bed3
tsv
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
146 results
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Clear Filters
ChIP-seq
single cell RNA-seq
total RNA-seq
DNase-seq
WGBS
ATAC-seq
FAIRE-seq
cell line
HepG2
45
1
GM12878
15
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
pancreatic beta cell
1
1
pancreatic cell
1
tissue
spleen
6
1
2
liver
4
2
body of pancreas
2
2
pancreas
2
1
brain
2
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