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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
ChIP-seq
Assay category
34
DNA binding
Target of assay
939
histone modification
938
histone
481
narrow histone mark
474
transcription factor
457
broad histone mark
308
control
104
RNA binding protein
89
recombinant protein
34
chromatin remodeller
5
nucleotide modification
5
other context
5
other post-translational modification
Date released
15
November, 2017
7
November, 2018
6
January, 2019
3
December, 2017
2
December, 2018
1
August, 2017
Available data
34
bam
34
bed narrowPeak
34
bigBed narrowPeak
34
bigWig
34
fastq
5
bed broadPeak
5
bigBed broadPeak
Organism
34
Homo sapiens
Biosample type
30
cell line
2
tissue
1
in vitro differentiated cells
1
primary cell
Organ
23
liver
10
blood
10
bodily fluid
connective tissue
1
epithelium
Project
34
AMP
Genome assembly (visualization)
34
hg19
32
GRCh38
Lab
34
AMP-T2D consortium
Audit category:
3
inconsistent control
Audit category:
6
missing controlled_by
Audit category:
11
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3
lab.title!
Mark McCarthy, Oxford
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
34 results
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ChIP-seq
cell line
HepG2
20
GM12878
10
tissue
liver
2
in vitro differentiated cells
hepatocyte
1
primary cell
skeletal muscle myoblast
1
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