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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
530
ChIP-seq
176
total RNA-seq
22
ATAC-seq
6
DNase-seq
4
WGBS
3
pCHi-C
2
Hi-C
1
RRBS
1
single cell RNA-seq
Assay category
530
DNA binding
177
Transcription
28
DNA accessibility
5
DNA methylation
2
3D chromatin structure
Target of assay
327
transcription factor
103
control
97
histone modification
96
histone
82
recombinant protein
57
RNA binding protein
56
narrow histone mark
40
broad histone mark
23
chromatin remodeller
2
other context
2
other post-translational modification
Date released
315
November, 2017
194
May, 2020
63
December, 2017
54
August, 2017
53
November, 2018
40
May, 2022
August, 2021
July, 2019
7
October, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
2
June, 2019
1
December, 2018
1
February, 2020
Available data
670
bam
597
bigWig
465
fastq
424
bed narrowPeak
358
bigBed narrowPeak
158
tsv
82
tagAlign
63
bed broadPeak
63
bigBed broadPeak
9
bed bed3+
3
tar
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3
1
bedpe bed3+
1
csv
1
hic
Organism
745
Homo sapiens
Biosample type
369
cell line
353
tissue
15
in vitro differentiated cells
8
primary cell
Organ
936
pancreas
745
liver
655
connective tissue
505
epithelium
478
adipose tissue
276
heart
267
brain
218
vasculature
213
blood vessel
213
kidney
155
bone element
136
artery
117
limb
86
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
29
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
745
AMP
Genome assembly (visualization)
597
hg19
520
GRCh38
Lab
705
AMP-T2D consortium
40
Karen Mohlke, UNC
Audit category:
27
inconsistent control
1
inconsistent ontology term
Audit category:
13
missing controlled_by
Audit category:
27
inconsistent control read length
8
inconsistent control run_type
files.file_type!
bed bed3
month_released!
August, 2021
July, 2019
BIOSAMPLE
ASSAY
745 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
WGBS
pCHi-C
Hi-C
RRBS
single cell RNA-seq
cell line
HepG2
360
5
1
2
1
tissue
liver
145
165
20
2
3
1
1
1
1
right lobe of liver
10
1
1
2
in vitro differentiated cells
hepatocyte
15
primary cell
hepatocyte
5
1
Liver fetal (hepatocyte)
1
hepatic stellate cell
1
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