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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
165
ChIP-seq
32
DNase-seq
17
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
2
RRBS
2
pCHi-C
1
FAIRE-seq
Assay category
165
DNA binding
36
DNA accessibility
21
Transcription
3
3D chromatin structure
2
DNA methylation
Target of assay
162
histone
162
histone modification
107
narrow histone mark
55
broad histone mark
control
3
RNA binding protein
3
transcription factor
Date released
79
October, 2019
76
November, 2017
30
June, 2019
May, 2019
15
July, 2019
13
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
Available data
191
bigWig
188
bam
178
bed narrowPeak
102
bigBed narrowPeak
99
tagAlign
47
bed broadPeak
38
bigBed broadPeak
35
bed bed3+
23
tsv
16
fastq
3
hdf5
2
bed bedMethyl
2
bigBed bedMethyl
bed bed3
1
tagAlign bed3+
Organism
229
Homo sapiens
Biosample type
214
tissue
15
primary cell
Organ
892
pancreas
677
liver
643
connective tissue
484
epithelium
467
adipose tissue
358
heart
335
kidney
229
brain
175
vasculature
170
blood vessel
155
bone element
129
artery
99
limb
84
musculature of body
63
blood
63
bodily fluid
60
eye
32
nerve
30
embryo
20
lung
20
vein
18
ureter
17
spleen
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
229
AMP
Genome assembly (visualization)
189
GRCh38
132
hg19
Lab
229
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bed3
month_released!
December, 2019
May, 2019
target.investigated_as!
control
BIOSAMPLE
ASSAY
229 results
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ChIP-seq
DNase-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
RRBS
pCHi-C
FAIRE-seq
tissue
brain
17
14
1
1
layer of hippocampus
20
caudate nucleus
13
1
1
substantia nigra
14
1
cingulate gyrus
12
+ See 77 more…
primary cell
astrocyte of the cerebellum
2
1
1
brain microvascular endothelial cell
2
1
1
choroid plexus epithelial cell
2
1
1
brain pericyte
1
1
astrocyte of the hippocampus
1
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