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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
77
ATAC-seq
48
total RNA-seq
41
WGBS
34
single cell RNA-seq
22
snATAC-seq
Assay category
99
DNA accessibility
82
Transcription
41
DNA methylation
Date released
647
February, 2021
411
August, 2017
400
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
211
June, 2019
200
May, 2022
168
July, 2018
160
February, 2023
96
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
70
May, 2019
61
November, 2019
60
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
15
May, 2023
11
November, 2020
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
134
zippedFastqFolder
38
bed narrowPeak
24
bam
24
fastq
22
tsv
20
bigWig
7
txt
1
bed bed3+
Organism
222
Homo sapiens
Biosample type
134
primary cell
88
tissue
Organ
105
pancreas
80
epithelium
41
liver
12
brain
4
musculature of body
3
blood vessel
3
heart
3
limb
vasculature
2
adipose tissue
2
artery
2
connective tissue
1
eye
1
nerve
1
spinal cord
Project
134
HPAP
88
AMP
Genome assembly (visualization)
39
hg19
Lab
134
Klaus Kaestner, Upenn
40
Karen Mohlke, UNC
24
AMP-T2D consortium
24
Kyle Gaulton, UCSD
Audit category:
1
audit script error
1
inconsistent ontology term
files.file_type!
bed bed3
organ_slims!
vasculature
target.investigated_as!
nucleotide modification
BIOSAMPLE
ASSAY
222 results
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ATAC-seq
total RNA-seq
WGBS
single cell RNA-seq
snATAC-seq
primary cell
Langerhans cell
33
21
pancreatic alpha cell
22
25
pancreatic beta cell
13
16
pancreatic acinar cell
4
tissue
liver
20
20
islet of Langerhans
18
6
skeletal muscle tissue
1
1
Ammon's horn
1
C1 segment of cervical spinal cord
1
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