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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
187
DNase-seq
40
single cell RNA-seq
23
ChIP-seq
16
total RNA-seq
3
ATAC-seq
Assay category
190
DNA accessibility
56
Transcription
23
DNA binding
Target of assay
19
histone
19
histone modification
11
narrow histone mark
broad histone mark
8
control
4
RNA binding protein
4
transcription factor
Date released
713
February, 2021
356
November, 2017
341
May, 2020
323
May, 2021
309
August, 2021
299
August, 2017
259
October, 2019
210
June, 2019
200
May, 2022
194
February, 2023
168
July, 2018
108
July, 2019
88
November, 2018
79
December, 2017
64
March, 2020
62
May, 2019
59
September, 2020
57
October, 2018
56
September, 2018
55
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
31
February, 2018
26
January, 2019
25
February, 2020
20
May, 2024
18
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
13
October, 2017
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
4
August, 2018
3
June, 2018
3
October, 2022
1
August, 2022
1
March, 2023
Available data
210
bam
205
bigWig
202
bed narrowPeak
202
bigBed narrowPeak
187
bed bed3+
187
bed broadPeak
187
bigBed broadPeak
41
fastq
19
zippedFastqFolder
Organism
269
Homo sapiens
Biosample type
163
tissue
106
primary cell
Organ
81
kidney
39
epithelium
39
musculature of body
35
heart
32
limb
30
brain
23
pancreas
18
ureter
14
connective tissue
7
eye
7
vasculature
5
blood vessel
2
artery
2
liver
1
adipose tissue
Project
210
AMP
59
HPAP
Genome assembly (visualization)
205
GRCh38
179
hg19
Lab
210
AMP-T2D consortium
59
Klaus Kaestner, Upenn
Audit category:
18
inconsistent ontology term
files.file_type!
bed bed3
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
269 results
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Clear Filters
DNase-seq
single cell RNA-seq
ChIP-seq
total RNA-seq
ATAC-seq
tissue
heart
18
muscle of arm
17
kidney
13
muscle of leg
13
brain
12
+ See 34 more…
primary cell
Langerhans cell
40
pancreatic alpha cell
15
2
cardiac fibroblast
3
5
cardiac muscle cell
1
3
epithelial cell of proximal tubule
1
3
+ See 20 more…
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