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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
43
single cell RNA-seq
22
ATAC-seq
17
total RNA-seq
15
ChIP-seq
Assay category
60
Transcription
22
DNA accessibility
15
DNA binding
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
713
February, 2021
411
August, 2017
406
November, 2017
399
May, 2021
341
May, 2020
319
August, 2021
October, 2019
218
June, 2019
200
May, 2022
195
February, 2023
168
July, 2018
120
May, 2019
108
July, 2019
94
December, 2017
88
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
64
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
58
fastq
19
zippedFastqFolder
17
bigWig
15
bam
14
tagAlign
12
bed narrowPeak
6
bigBed narrowPeak
4
bed broadPeak
Organism
97
Homo sapiens
Biosample type
59
primary cell
38
tissue
Organ
24
pancreas
19
epithelium
16
brain
14
kidney
2
adipose tissue
2
connective tissue
1
spleen
Project
59
HPAP
38
AMP
Genome assembly (visualization)
29
GRCh38
14
hg19
Lab
59
Klaus Kaestner, Upenn
23
AMP-T2D consortium
14
Katalin Susztak, Upenn
1
Stephen Parker, UMich
Audit category:
4
missing controlled_by
files.file_type!
bed bed3
month_released!
October, 2019
BIOSAMPLE
ASSAY
97 results
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Clear Filters
single cell RNA-seq
ATAC-seq
total RNA-seq
ChIP-seq
primary cell
Langerhans cell
40
pancreatic alpha cell
2
15
pancreatic beta cell
1
1
tissue
brain
15
kidney
3
11
body of pancreas
4
adipose tissue
1
cerebellum (Hemisphere)
1
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