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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
60
ChIP-seq
9
ATAC-seq
8
snATAC-seq
1
pCHi-C
Assay category
62
Transcription
60
DNA binding
17
DNA accessibility
Target of assay
51
transcription factor
10
RNA binding protein
10
chromatin remodeller
6
control
1
histone
1
histone modification
1
narrow histone mark
Date released
150
February, 2021
27
December, 2018
18
January, 2019
15
November, 2018
8
January, 2021
4
February, 2023
1
January, 2018
1
May, 2021
Available data
126
bam
113
bigWig
88
txt
62
bed narrowPeak
60
fastq
58
tsv
54
bigBed narrowPeak
bed bed3
Organism
224
Homo sapiens
Biosample type
154
tissue
61
cell line
9
primary cell
Organ
946
pancreas
790
liver
678
connective tissue
524
epithelium
adipose tissue
393
heart
354
kidney
285
brain
236
vasculature
230
blood vessel
155
bone element
141
artery
122
limb
96
musculature of body
69
blood
69
bodily fluid
61
eye
43
nerve
37
embryo
25
spleen
22
vein
20
lung
18
ureter
12
skeleton
5
gonad
5
ovary
2
intestine
2
pericardium
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
215
AMP
9
T1D
Genome assembly (visualization)
121
hg19
120
GRCh38
Lab
215
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
files.file_type!
bed bed3
organ_slims!
adipose tissue
BIOSAMPLE
ASSAY
224 results
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RNA microarray
total RNA-seq
ChIP-seq
ATAC-seq
snATAC-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
distal epiphysis
1
distal epiphysis of femur
1
+ See 9 more…
cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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