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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
DNase-seq
11
snATAC-seq
10
single cell RNA-seq
6
ChIP-seq
6
Hi-C
6
total RNA-seq
5
RRBS
2
pCHi-C
2
small RNA-seq
1
ATAC-seq
1
WGBS
Assay category
45
DNA accessibility
18
Transcription
6
3D chromatin structure
6
DNA binding
6
DNA methylation
Target of assay
histone
33
histone modification
20
broad histone mark
13
narrow histone mark
6
control
Date released
35
June, 2019
19
April, 2020
10
July, 2019
7
August, 2017
6
March, 2020
2
February, 2020
2
May, 2022
1
January, 2018
1
May, 2019
Available data
43
bam
41
bigWig
34
bed bed3+
33
bed broadPeak
33
bed narrowPeak
33
bigBed broadPeak
33
bigBed narrowPeak
10
tsv
4
bed bedMethyl
4
bigBed bedMethyl
2
bedpe bed3+
2
fastq
2
hic
2
tagAlign
1
txt
Organism
82
Homo sapiens
Biosample type
77
tissue
6
primary cell
Organ
795
pancreas
688
liver
600
connective tissue
459
adipose tissue
431
epithelium
324
kidney
296
heart
165
vasculature
160
blood vessel
155
bone element
121
artery
98
brain
73
limb
68
blood
68
bodily fluid
63
musculature of body
58
eye
25
embryo
20
lung
19
nerve
19
spleen
18
ureter
12
skeleton
7
vein
2
intestine
2
pericardium
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
64
AMP
19
LungMap
Genome assembly (visualization)
46
hg19
40
GRCh38
Lab
64
AMP-T2D consortium
19
Xin Sun, UCSD
Audit category:
2
inconsistent ontology term
1
audit script error
files.file_type!
bed bed3
target.investigated_as!
histone
BIOSAMPLE
ASSAY
83 results
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DNase-seq
snATAC-seq
single cell RNA-seq
ChIP-seq
Hi-C
total RNA-seq
RRBS
pCHi-C
small RNA-seq
ATAC-seq
WGBS
tissue
lung
10
9
1
muscle of arm
17
muscle of leg
13
1
1
skeletal muscle tissue
1
1
3
1
4
1
1
gastrocnemius medialis
4
1
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primary cell
skeletal muscle cell
1
1
1
skeletal muscle satellite cell
1
1
1
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