Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
247
gene expression
136
target gene predictions
120
candidate regulatory elements
93
differential activity
68
chromatin state
57
accessible chromatin
49
binding sites
38
histone modifications
38
variant allelic effects
10
eQTL
3
Fine-mapped variants
3
caQTL
Date released
212
February, 2021
188
September, 2022
155
September, 2023
49
November, 2021
44
February, 2024
38
March, 2023
36
May, 2021
29
June, 2020
22
August, 2021
15
May, 2020
12
March, 2020
11
February, 2020
10
January, 2021
8
November, 2022
7
October, 2022
6
August, 2017
6
August, 2018
5
February, 2023
3
January, 2020
3
May, 2022
2
March, 2024
January, 2022
1
July, 2020
Available data
613
bed bed3+
332
tsv
bigWig
78
txt
62
bed bed9
14
bigBed narrowPeak
6
csv
4
bam
3
bed gappedPeak
3
bigBed bed9
3
xls
Organism
862
Homo sapiens
Biosample type
675
primary cell
95
tissue
68
cell line
24
in vitro differentiated cells
Organ
773
epithelium
615
kidney
428
brain
399
connective tissue
358
musculature of body
301
lung
275
intestine
232
vasculature
230
heart
228
limb
218
bodily fluid
216
pancreas
213
embryo
207
blood
196
skin of body
178
blood vessel
169
large intestine
142
extraembryonic component
132
liver
113
stomach
84
mammary gland
81
adipose tissue
81
small intestine
81
uterus
78
bone element
77
prostate gland
73
eye
70
placenta
66
adrenal gland
64
penis
63
artery
62
lymph node
61
ureter
48
thymus
46
gonad
42
spinal cord
40
esophagus
32
spleen
24
lymphoid tissue
24
testis
22
nerve
22
vein
21
ovary
21
thyroid gland
18
lymphatic vessel
18
mouth
14
bronchus
12
breast
12
pituitary gland
10
bone marrow
10
skeleton
10
tongue
10
urinary bladder
9
vagina
5
trachea
4
nose
1
pericardium
Project
646
AMP
155
KPMP
49
ENCODE
10
T1D
2
community
Genome assembly (visualization)
515
hg19
135
GRCh38
2
hg18
files.file_type!
bed bed9+
bigWig
month_released!
January, 2022
BIOSAMPLE
TYPE
862 results
search-icon
table-tab-icon
Clear Filters
gene expression
target gene predictions
candidate regulatory elements
differential activity
chromatin state
accessible chromatin
binding sites
histone modifications
variant allelic effects
eQTL
Fine-mapped variants
caQTL
primary cell
endothelial cell
9
7
2
2
1
2
1
2
epithelial cell of proximal tubule
16
1
2
1
1
1
hepatocyte
8
3
1
1
1
1
4
2
glomerular endothelial cell
14
1
2
1
1
1
endothelial cell of umbilical vein
4
6
5
1
2
1
+ See 134 more…
tissue
liver
1
10
13
1
9
2
1
2
6
1
breast epithelium
3
5
2
1
esophagus squamous epithelium
2
6
2
1
right lobe of liver
1
1
2
1
1
3
pigmented layer of retina
7
+ See 10 more…
cell line
EndoC_BH1
8
1
3
7
1
HepG2
3
2
2
1
3
5
HuH-7
1
1
1
1
1
1
keratinocyte
3
1
HuH-7.5
1
1
1
+ See 10 more…
in vitro differentiated cells
hepatocyte
1
2
1
retinal pigment epithelial cell
4
foreskin keratinocyte
1
1
1
hepatocyte(AFP)
3
mammary gland epithelial cell
1
1
1
+ See 4 more…
See all biosamples
Download