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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
102
target gene predictions
78
candidate regulatory elements
40
chromatin state
10
binding sites
9
accessible chromatin
7
histone modifications
4
gene expression
3
eQTL
Date released
110
September, 2022
56
February, 2021
54
February, 2024
9
June, 2020
7
May, 2021
4
March, 2024
4
November, 2021
3
August, 2017
3
January, 2022
2
October, 2022
1
March, 2020
Available data
213
bed bed3+
37
bed bed9
bigWig
4
tsv
Organism
253
Homo sapiens
Biosample type
147
tissue
99
cell line
7
primary cell
Organ
783
epithelium
616
kidney
445
brain
413
connective tissue
359
musculature of body
302
lung
278
intestine
238
vasculature
235
heart
230
limb
220
pancreas
218
bodily fluid
213
embryo
207
blood
199
skin of body
181
blood vessel
171
large intestine
143
extraembryonic component
135
liver
114
stomach
84
adipose tissue
84
mammary gland
82
small intestine
82
uterus
78
bone element
78
prostate gland
73
eye
71
placenta
67
adrenal gland
66
artery
64
penis
62
lymph node
61
ureter
49
gonad
48
thymus
43
esophagus
43
spinal cord
33
spleen
26
testis
24
lymphoid tissue
23
nerve
22
ovary
22
thyroid gland
22
vein
21
lymphatic vessel
19
mouth
14
bronchus
13
breast
13
pituitary gland
10
bone marrow
10
skeleton
10
tongue
10
urinary bladder
10
vagina
5
trachea
4
nose
1
pericardium
Project
249
AMP
4
ENCODE
Genome assembly (visualization)
246
hg19
97
GRCh38
files.file_type!
bed bed9+
bigWig
BIOSAMPLE
TYPE
253 results
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Clear Filters
target gene predictions
candidate regulatory elements
chromatin state
binding sites
accessible chromatin
histone modifications
gene expression
eQTL
tissue
large intestine
14
27
13
1
1
sigmoid colon
7
10
5
1
transverse colon
5
8
4
1
1
colonic mucosa
2
4
3
1
mucosa of rectum
2
4
3
+ See 11 more…
cell line
HeLa-S3
55
5
3
1
HT-29
2
2
1
1
1
1
SW480
1
2
1
1
1
1
HCT116
3
2
1
HCT-116 cell
1
2
1
+ See 5 more…
primary cell
Ishikawa
1
1
1
colon epithelial cell
3
uterine smooth muscle cell
1
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