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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1661
candidate regulatory elements
1351
target gene predictions
977
histone modifications
845
accessible chromatin
817
binding sites
663
gene expression
169
eQTL
167
differential activity
138
variant allelic effects
71
Fine-mapped variants
41
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2585
February, 2021
1668
September, 2022
384
May, 2021
378
February, 2024
333
November, 2021
287
June, 2020
286
September, 2023
150
May, 2020
128
August, 2021
125
March, 2020
105
January, 2022
101
October, 2022
January, 2020
70
March, 2023
61
February, 2020
56
January, 2021
44
November, 2022
35
August, 2017
32
February, 2023
29
March, 2024
19
April, 2020
15
May, 2022
12
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
2
May, 2024
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5837
bed bed3+
876
tsv
bed bed9
480
bigWig
108
txt
bed bed9+
33
bigBed bed9
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6889
Homo sapiens
Biosample type
2259
primary cell
2165
cell line
2080
tissue
427
in vitro differentiated cells
4
stem cell
Organ
887
epithelium
561
kidney
409
connective tissue
372
brain
299
musculature of body
260
pancreas
241
lung
234
intestine
222
vasculature
198
heart
193
bodily fluid
188
embryo
187
limb
184
blood
170
blood vessel
170
skin of body
141
large intestine
139
liver
113
extraembryonic component
98
eye
96
stomach
79
uterus
77
adipose tissue
74
bone element
73
mammary gland
65
prostate gland
65
small intestine
63
artery
59
adrenal gland
57
placenta
54
lymph node
54
penis
48
ureter
42
gonad
38
esophagus
38
thymus
34
spinal cord
28
spleen
22
testis
nerve
19
lymphatic vessel
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
bone marrow
11
breast
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
6228
AMP
333
ENCODE
281
KPMP
60
T1D
19
LungMap
11
community
5
ITG
Genome assembly (visualization)
5971
hg19
939
GRCh38
4
hg18
files.file_type!
bed bed9
bed bed9+
month_released!
January, 2020
organ_slims!
nerve
tongue
BIOSAMPLE
TYPE
6937 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
differential activity
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
common myeloid progenitor, CD34-positive
27
14
endothelial cell
7
1
15
2
9
1
2
2
B cell
14
10
6
2
+ See 446 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
K562
7
23
1
1
2
1
EndoC_BH1
1
1
8
1
8
3
1
+ See 765 more…
tissue
heart
37
20
1
3
1
3
2
stomach
40
21
1
3
1
1
kidney
29
14
2
8
1
7
1
1
brain
29
16
3
1
1
1
2
1
lung
33
17
1
1
+ See 258 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 121 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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