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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1700
candidate regulatory elements
1330
target gene predictions
976
histone modifications
815
binding sites
672
gene expression
382
accessible chromatin
169
eQTL
167
differential activity
75
chromatin state
71
Fine-mapped variants
56
variant allelic effects
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
pQTL
2
other
1
representative DNase hypersensitivity sites
Date released
2568
February, 2021
1664
September, 2022
371
May, 2021
339
February, 2024
287
June, 2020
286
September, 2023
125
March, 2020
110
November, 2021
108
August, 2021
101
January, 2022
101
October, 2022
May, 2020
70
March, 2023
61
February, 2020
42
May, 2022
41
May, 2024
35
August, 2017
33
November, 2022
30
March, 2024
28
January, 2021
18
January, 2020
13
February, 2023
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5801
bed bed3+
894
tsv
bed bed9
bigWig
108
txt
37
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6447
Homo sapiens
Biosample type
2167
cell line
1981
tissue
1884
primary cell
411
in vitro differentiated cells
4
stem cell
Organ
719
epithelium
524
kidney
362
brain
362
connective tissue
283
musculature of body
232
lung
223
intestine
203
pancreas
194
vasculature
193
bodily fluid
186
embryo
184
blood
180
heart
172
limb
165
skin of body
146
blood vessel
138
large intestine
118
liver
110
extraembryonic component
91
stomach
78
uterus
73
adipose tissue
70
mammary gland
65
prostate gland
64
bone element
63
small intestine
62
eye
55
artery
55
placenta
54
lymph node
54
penis
53
adrenal gland
45
ureter
41
gonad
36
esophagus
36
thymus
35
spinal cord
27
spleen
22
testis
19
lymphatic vessel
19
lymphoid tissue
18
ovary
18
thyroid gland
nerve
17
vein
15
mouth
13
pituitary gland
bronchus
11
breast
9
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
1
pericardium
Project
6010
AMP
281
KPMP
110
ENCODE
32
T1D
11
community
5
ITG
Genome assembly (visualization)
5491
hg19
660
GRCh38
4
hg18
files.file_type!
bed bed9
bigWig
month_released!
May, 2020
organ_slims!
bronchus
nerve
BIOSAMPLE
TYPE
6449 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
eQTL
differential activity
chromatin state
Fine-mapped variants
variant allelic effects
caQTL
hQTL
sQTL
variant to gene
meQTL
pQTL
other
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
+ See 764 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
3
2
kidney
29
14
2
1
7
1
1
brain
29
16
3
1
1
1
2
lung
33
17
1
1
+ See 236 more…
primary cell
monocyte
1
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
4
30
3
1
common myeloid progenitor, CD34-positive
27
14
endothelial cell
3
7
1
2
9
2
1
2
2
B cell
17
9
2
+ See 406 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 117 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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