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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1682
candidate regulatory elements
1335
target gene predictions
972
histone modifications
805
binding sites
673
gene expression
381
accessible chromatin
171
eQTL
167
differential activity
135
variant allelic effects
74
Fine-mapped variants
74
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2548
February, 2021
1646
September, 2022
369
May, 2021
339
February, 2024
286
September, 2023
285
June, 2020
128
March, 2020
108
August, 2021
108
November, 2021
102
January, 2022
99
May, 2020
98
October, 2022
70
March, 2023
63
February, 2020
42
May, 2022
41
May, 2024
34
August, 2017
33
November, 2022
30
March, 2024
28
January, 2021
18
January, 2020
13
February, 2023
9
August, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
November, 2019
1
November, 2020
Available data
5889
bed bed3+
900
tsv
bed bed9
bigWig
108
txt
40
bigBed bed9
34
bed bed9+
24
csv
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6502
Homo sapiens
Biosample type
2140
cell line
2046
tissue
1899
primary cell
415
in vitro differentiated cells
4
stem cell
Organ
733
epithelium
540
kidney
379
brain
372
connective tissue
288
musculature of body
232
lung
223
intestine
207
pancreas
207
vasculature
193
bodily fluid
190
heart
186
embryo
184
blood
180
limb
165
skin of body
155
blood vessel
138
large intestine
121
liver
110
extraembryonic component
91
stomach
78
uterus
76
adipose tissue
mammary gland
65
bone element
65
prostate gland
64
eye
63
small intestine
59
artery
55
placenta
54
lymph node
54
penis
53
adrenal gland
48
ureter
41
gonad
37
thymus
36
esophagus
35
spinal cord
27
spleen
22
testis
19
lymphatic vessel
19
lymphoid tissue
19
nerve
18
ovary
18
thyroid gland
18
vein
15
mouth
13
pituitary gland
12
bronchus
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
7
skeleton
5
trachea
3
nose
pericardium
Project
6069
AMP
281
KPMP
108
ENCODE
32
T1D
11
community
5
ITG
Genome assembly (visualization)
5529
hg19
663
GRCh38
4
hg18
files.file_type!
bed bed9
bigWig
organ_slims!
mammary gland
pericardium
BIOSAMPLE
TYPE
6506 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
binding sites
gene expression
accessible chromatin
eQTL
differential activity
variant allelic effects
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
2
8
1
A549
21
19
1
2
1
K562
7
23
1
2
1
1
EndoC_BH1
1
1
1
8
7
3
1
+ See 762 more…
tissue
stomach
40
21
1
1
3
1
heart
37
20
1
1
3
2
2
kidney
29
14
2
1
7
1
1
1
brain
29
16
3
1
1
1
2
1
lung
33
17
1
1
+ See 241 more…
primary cell
monocyte
2
86
1
15
2
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
3
1
common myeloid progenitor, CD34-positive
27
14
B cell
17
10
2
endothelial cell
3
7
1
2
9
2
1
2
2
+ See 409 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
7
10
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
1
1
3
4
cardiomyocytes
11
embryonic stem cell
1
1
1
6
+ See 119 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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