Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
69
candidate regulatory elements
44
target gene predictions
10
accessible chromatin
6
binding sites
5
histone modifications
3
chromatin state
2
eQTL
Date released
65
September, 2022
46
February, 2021
7
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
2
January, 2022
1
March, 2020
1
October, 2022
Available data
137
bed bed3+
bed bed9
3
bigWig
tsv
Organism
139
Homo sapiens
Biosample type
103
tissue
30
cell line
6
primary cell
Organ
569
epithelium
353
connective tissue
333
brain
324
kidney
290
musculature of body
240
lung
231
intestine
192
bodily fluid
183
blood
181
pancreas
180
heart
178
embryo
177
limb
170
vasculature
168
skin of body
139
large intestine
130
blood vessel
114
liver
113
extraembryonic component
98
eye
94
stomach
77
uterus
73
mammary gland
71
bone element
small intestine
64
prostate gland
59
adipose tissue
58
adrenal gland
57
placenta
54
lymph node
54
penis
51
artery
51
ureter
40
gonad
38
thymus
36
esophagus
30
spinal cord
27
spleen
21
testis
18
lymphoid tissue
18
ovary
18
thyroid gland
18
vein
15
nerve
15
skeleton
14
bronchus
14
lymphatic vessel
14
mouth
12
bone marrow
12
pituitary gland
10
breast
7
tongue
7
urinary bladder
7
vagina
5
trachea
3
nose
1
pericardium
Project
133
AMP
6
ENCODE
Genome assembly (visualization)
137
hg19
10
GRCh38
files.file_type!
bed bed9
tsv
month_released!
August, 2018
organ_slims!
small intestine
BIOSAMPLE
TYPE
139 results
search-icon
table-tab-icon
Clear Filters
candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
chromatin state
eQTL
tissue
large intestine
27
14
1
1
sigmoid colon
10
7
1
transverse colon
8
5
1
1
colonic mucosa
4
2
1
1
mucosa of rectum
4
2
1
+ See 5 more…
cell line
HT-29
2
2
1
1
1
SW480
2
1
1
1
1
HCT116
2
3
HCT-116 cell
1
1
2
RKO
1
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
See all biosamples
Download