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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
72
candidate regulatory elements
47
target gene predictions
11
accessible chromatin
6
binding sites
5
histone modifications
3
chromatin state
3
gene expression
2
eQTL
Date released
69
September, 2022
47
February, 2021
8
June, 2020
6
November, 2021
5
May, 2021
3
August, 2017
3
February, 2024
3
March, 2024
2
January, 2022
2
March, 2020
1
October, 2022
Available data
144
bed bed3+
bed bed9
3
bigWig
3
tsv
Organism
149
Homo sapiens
Biosample type
113
tissue
30
cell line
6
primary cell
Organ
889
epithelium
575
kidney
425
connective tissue
400
brain
304
musculature of body
244
pancreas
241
lung
237
vasculature
234
intestine
211
heart
194
limb
193
bodily fluid
188
embryo
184
blood
177
blood vessel
170
skin of body
144
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
73
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
51
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
lymphatic vessel
22
testis
21
nerve
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
14
bronchus
13
pituitary gland
11
breast
10
bone marrow
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
143
AMP
6
ENCODE
Genome assembly (visualization)
144
hg19
10
GRCh38
files.file_type!
bed bed9
month_released!
January, 2021
organ_slims!
lymphoid tissue
BIOSAMPLE
TYPE
149 results
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candidate regulatory elements
target gene predictions
accessible chromatin
binding sites
histone modifications
chromatin state
gene expression
eQTL
tissue
large intestine
27
14
1
1
sigmoid colon
10
7
1
transverse colon
8
5
1
1
colonic mucosa
4
2
1
1
mucosa of rectum
4
2
1
+ See 10 more…
cell line
HT-29
2
2
1
1
1
SW480
2
1
1
1
1
HCT116
2
3
HCT-116 cell
1
1
2
RKO
1
1
1
1
+ See 3 more…
primary cell
colon epithelial cell
3
3
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