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Schema
Citing CMDGA
Annotation Matrix
Click or enter search terms to filter the experiments included in the matrix.
Annotation type
1504
candidate regulatory elements
1224
target gene predictions
946
histone modifications
848
accessible chromatin
763
binding sites
480
gene expression
165
eQTL
123
variant allelic effects
111
differential activity
74
Fine-mapped variants
73
chromatin state
13
caQTL
5
hQTL
5
sQTL
4
variant to gene
3
meQTL
3
other
3
pQTL
1
representative DNase hypersensitivity sites
Date released
2327
February, 2021
1478
September, 2022
380
May, 2021
348
February, 2024
328
November, 2021
261
June, 2020
146
September, 2023
133
May, 2020
125
March, 2020
105
January, 2022
98
August, 2021
80
October, 2022
70
March, 2023
69
January, 2020
56
January, 2021
55
February, 2020
49
May, 2022
44
November, 2022
41
May, 2024
33
August, 2017
32
February, 2023
27
March, 2024
18
April, 2020
13
November, 2019
9
August, 2018
9
October, 2019
3
November, 2020
3
September, 2018
2
January, 2018
1
April, 2019
1
August, 2020
1
August, 2022
1
July, 2020
1
June, 2021
Available data
5458
bed bed3+
bed bed9
648
tsv
508
bigWig
38
bigBed bed9
34
bed bed9+
24
csv
21
txt
16
bigBed narrowPeak
4
bam
3
bed gappedPeak
3
xls
Organism
6300
Homo sapiens
Biosample type
2023
primary cell
1967
cell line
1923
tissue
429
in vitro differentiated cells
4
stem cell
Organ
909
epithelium
kidney
427
connective tissue
400
brain
304
musculature of body
264
pancreas
241
lung
237
vasculature
234
intestine
211
heart
194
limb
193
bodily fluid
188
embryo
blood
177
blood vessel
170
skin of body
144
liver
141
large intestine
113
extraembryonic component
100
eye
96
stomach
81
adipose tissue
79
uterus
75
bone element
73
mammary gland
67
artery
65
prostate gland
65
small intestine
59
adrenal gland
57
placenta
54
lymph node
54
penis
ureter
42
gonad
38
esophagus
38
thymus
35
spinal cord
28
spleen
22
lymphatic vessel
22
testis
21
nerve
19
lymphoid tissue
19
ovary
19
thyroid gland
19
vein
15
mouth
15
skeleton
bronchus
13
pituitary gland
12
bone marrow
11
breast
8
tongue
8
urinary bladder
8
vagina
5
trachea
3
nose
1
pericardium
Project
5785
AMP
328
ENCODE
141
KPMP
60
T1D
18
LungMap
11
community
5
ITG
Genome assembly (visualization)
5627
hg19
988
GRCh38
4
hg18
files.file_type!
bed bed9
organ_slims!
blood
bronchus
kidney
ureter
BIOSAMPLE
TYPE
6348 results
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Clear Filters
candidate regulatory elements
target gene predictions
histone modifications
accessible chromatin
binding sites
gene expression
eQTL
variant allelic effects
differential activity
Fine-mapped variants
chromatin state
caQTL
hQTL
sQTL
variant to gene
meQTL
other
pQTL
representative DNase hypersensitivity sites
primary cell
monocyte
2
86
18
1
15
4
2
1
1
CD8-positive, alpha-beta T cell
7
5
30
4
3
1
endothelial cell
3
7
1
15
2
9
1
2
2
common myeloid progenitor, CD34-positive
27
14
B cell
17
10
6
2
+ See 377 more…
cell line
HeLa-S3
5
55
1
H1-hESC
1
39
1
1
2
8
A549
21
19
1
1
2
EndoC_BH1
1
1
8
1
8
1
3
MCF-7
9
6
2
1
3
+ See 727 more…
tissue
heart
37
20
1
5
1
3
2
stomach
40
21
1
3
1
1
brain
29
16
3
2
1
1
2
1
lung
33
17
1
1
muscle of arm
33
16
1
1
+ See 239 more…
in vitro differentiated cells
neural progenitor cell
5
5
15
10
7
hematopoietic multipotent progenitor cell
19
10
1
1
1
1
adipocyte
4
6
1
4
1
1
4
cardiomyocytes
11
embryonic stem cell
1
1
6
1
+ See 120 more…
stem cell
H1-hESC
1
mesenchymal stem cell
1
mesendoderm
1
undifferentiated ESC (H9 cell line)
1
See all biosamples
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