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Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
129
ChIP-seq
93
single cell RNA-seq
69
total RNA-seq
47
ATAC-seq
27
DNase-seq
3
Hi-C
3
pCHi-C
2
WGBS
1
small RNA-seq
Assay category
163
Transcription
129
DNA binding
74
DNA accessibility
3
3D chromatin structure
2
DNA methylation
Target of assay
95
histone
95
histone modification
57
broad histone mark
38
narrow histone mark
18
control
16
transcription factor
10
RNA binding protein
Date released
92
August, 2021
66
February, 2021
57
April, 2019
40
May, 2024
36
February, 2023
27
June, 2019
21
May, 2019
15
July, 2019
8
October, 2019
7
March, 2020
3
February, 2020
2
May, 2021
Available data
215
bigWig
200
bam
185
bed narrowPeak
165
tsv
88
bigBed narrowPeak
27
bed bed3+
27
bed broadPeak
27
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
6
tagAlign
3
bedpe bed3+
3
hic
Organism
374
Homo sapiens
Biosample type
306
tissue
66
cell line
2
primary cell
Organ
940
pancreas
788
liver
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
374
AMP
Genome assembly (visualization)
251
GRCh38
178
hg19
Lab
334
AMP-T2D consortium
40
Patrick T. Ellinor, Broad
files.file_type!
bed bedMethyl
files.file_type!!
bed bedMethyl
organ_slims!
connective tissue
BIOSAMPLE
ASSAY
374 results
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ChIP-seq
single cell RNA-seq
total RNA-seq
ATAC-seq
DNase-seq
Hi-C
pCHi-C
WGBS
small RNA-seq
tissue
heart left ventricle
35
18
3
2
3
1
1
2
left cardiac atrium
40
18
1
coronary artery
5
1
36
2
heart
14
1
4
18
1
1
heart right ventricle
13
17
1
1
1
1
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cell line
smooth muscle cell of the coronary artery
6
52
8
primary cell
endothelial cell of coronary artery
1
smooth muscle cell of the coronary artery
1
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