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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
164
ChIP-seq
89
total RNA-seq
7
WGBS
2
RRBS
1
DNase-seq
Assay category
164
DNA binding
89
Transcription
9
DNA methylation
1
DNA accessibility
Target of assay
91
histone
91
histone modification
53
broad histone mark
50
control
38
narrow histone mark
23
transcription factor
1
RNA binding protein
Date released
684
February, 2021
314
May, 2020
266
May, 2021
263
August, 2017
168
July, 2018
162
May, 2022
147
August, 2021
140
February, 2023
111
October, 2019
93
November, 2017
72
July, 2019
59
September, 2020
58
March, 2020
49
April, 2018
31
October, 2018
27
September, 2018
25
February, 2020
24
November, 2019
23
February, 2018
22
December, 2017
22
May, 2019
19
April, 2020
16
January, 2021
14
November, 2020
11
October, 2017
10
April, 2019
9
January, 2019
8
January, 2018
8
November, 2018
7
August, 2020
7
December, 2019
7
June, 2019
6
September, 2017
5
December, 2018
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
1
May, 2023
Available data
287
fastq
282
bam
272
bigWig
bed narrowPeak
89
tsv
85
tagAlign
42
bigBed narrowPeak
41
bed broadPeak
33
bed bed3+
15
bigBed broadPeak
bed bedMethyl
6
bigBed bedMethyl
Organism
262
Homo sapiens
Biosample type
213
tissue
25
in vitro differentiated cells
25
primary cell
Organ
139
pancreas
77
connective tissue
52
adipose tissue
35
liver
12
epithelium
11
musculature of body
Project
263
AMP
Genome assembly (visualization)
130
hg19
129
GRCh38
Lab
263
AMP-T2D consortium
Audit category:
38
missing controlled_by
files.file_type!
bed bedMethyl
bed narrowPeak
organ_slims!
adrenal gland
kidney
BIOSAMPLE
ASSAY
263 results
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Clear Filters
ChIP-seq
total RNA-seq
WGBS
RRBS
DNase-seq
tissue
islet of Langerhans
24
89
subcutaneous abdominal adipose tissue
35
3
liver
31
3
white adipose tissue
12
skeletal muscle tissue
9
2
+ See 3 more…
in vitro differentiated cells
adipocyte
25
primary cell
pancreatic endocrine cell
12
pancreatic alpha cell
6
pancreatic beta cell
6
skeletal muscle myoblast
1
See all biosamples
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