Toggle navigation
Home
About
Project overview
Policies
News
Contact
Data
Experiments
Annotations
Single Cell Embeddings
Statistical Models
Gene Perturbations
Data Standards & QC
Pipelines
Consortia
Publications
Tools
Single Cell Browser
Help
Getting started
Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
189
total RNA-seq
139
ChIP-seq
4
Hi-C
4
WGBS
3
pCHi-C
3
small RNA-seq
2
STARR-seq
1
DNase-seq
1
single cell RNA-seq
1
whole genome sequencing assay
Assay category
193
Transcription
139
DNA binding
4
3D chromatin structure
4
DNA methylation
1
DNA accessibility
1
DNA sequencing
Target of assay
108
control
22
histone
22
histone modification
13
broad histone mark
9
narrow histone mark
9
transcription factor
2
RNA binding protein
1
recombinant protein
Date released
167
May, 2020
66
November, 2017
35
August, 2017
20
May, 2022
18
August, 2021
13
December, 2017
9
July, 2019
5
December, 2019
5
January, 2019
3
March, 2020
2
February, 2021
1
December, 2018
1
February, 2020
1
November, 2018
1
October, 2019
Available data
681
bam
622
bigWig
465
fastq
bed narrowPeak
358
bigBed narrowPeak
174
tsv
86
tagAlign
63
bed broadPeak
63
bigBed broadPeak
13
bed bed3+
bed bedMethyl
3
bigBed bedMethyl
3
tar
2
bedpe bed3+
2
hic
1
bed bed3
1
csv
1
hdf5
1
vcf
Organism
347
Homo sapiens
Biosample type
247
tissue
92
cell line
7
primary cell
1
in vitro differentiated cells
Organ
726
pancreas
606
connective tissue
476
adipose tissue
367
epithelium
347
liver
194
heart
167
kidney
151
bone element
101
vasculature
100
blood vessel
81
brain
67
artery
musculature of body
29
limb
27
eye
23
embryo
20
lung
16
nerve
15
blood
15
bodily fluid
9
spleen
9
vein
skeleton
5
gonad
5
ovary
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
347
AMP
Genome assembly (visualization)
186
hg19
163
GRCh38
Lab
310
AMP-T2D consortium
20
Karen Mohlke, UNC
17
Bing Ren, UCSD
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bedMethyl
bed narrowPeak
organ_slims!
musculature of body
skeleton
BIOSAMPLE
ASSAY
347 results
search-icon
table-tab-icon
Clear Filters
total RNA-seq
ChIP-seq
Hi-C
WGBS
pCHi-C
small RNA-seq
STARR-seq
DNase-seq
single cell RNA-seq
whole genome sequencing assay
tissue
liver
167
63
1
3
1
1
1
right lobe of liver
3
3
1
2
1
cell line
HepG2
14
71
2
2
2
1
primary cell
hepatocyte
5
1
endothelial cell of hepatic sinusoid
1
in vitro differentiated cells
hepatocyte
1
Download