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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 696ChIP-seq
  • 107total RNA-seq
  • 102single cell RNA-seq
  • 5GRO-seq
  • 3DNase-seq
  • 2FAIRE-seq
  • 2WGBS
  • 1ATAC-seq
Assay category
  • 696DNA binding
  • 209Transcription
  • 6DNA accessibility
  • 2DNA methylation
Target of assay
  • 345transcription factor
  • 222histone
  • 222histone modification
  • 127control
  • 115broad histone mark
  • 106narrow histone mark
  • 82recombinant protein
  • 68RNA binding protein
  • 25chromatin remodeller
  • 2other context
  • 2other post-translational modification
Date released
  • 281November, 2017
  • 173August, 2017
  • 90December, 2017
  • 76February, 2023
  • 46November, 2018
  • 42July, 2018
  • 39February, 2018
  • 37April, 2018
  • 35September, 2020
  • 32September, 2018
  • 23October, 2018
  • 17January, 2019
  • 10October, 2017
  • 6September, 2017
  • 5January, 2018
  • 2August, 2018
  • 2December, 2018
  • 2June, 2018
Available data
  • 908fastq
  • 802bam
  • 692bigWig
  • 523bed narrowPeak
  • 382bigBed narrowPeak
  • 98tsv
  • 88bed broadPeak
  • 79bigBed broadPeak
  • 51bed bed3+
  • 39tagAlign
  • 19zippedFastqFolder
  • bed bedMethyl
  • 8bigBed bedMethyl
  • 3tar
Organism
  • 911Homo sapiens
Biosample type
  • 324cell line
  • 283primary cell
  • 168tissue
  • 139in vitro differentiated cells
  • 4stem cell
Organ
  • 385liver
  • 255pancreas
  • 181epithelium
  • 72connective tissue
  • 27embryo
  • 20brain
  • 16adipose tissue
  • 15blood
  • 15bodily fluid
  • 7spleen
  • 6vasculature
  • 3blood vessel
Project
  • 807AMP
  • 111HPAP
Genome assembly (visualization)
  • 687hg19
  • 635GRCh38
  • 5hg18
Lab
  • 807AMP-T2D consortium
  • 111Klaus Kaestner, Upenn
Audit category:
  • 28inconsistent control
  • 11inconsistent ontology term
Audit category:
  • 83missing controlled_by
Audit category:
  • 49inconsistent control read length
  • 3inconsistent assembly
  • 1inconsistent control run_type
files.file_type!
  • bed bedMethyl
BIOSAMPLE
ASSAY

918 results

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Clear Filters
ChIP-seq
total RNA-seq
single cell RNA-seq
GRO-seq
DNase-seq
FAIRE-seq
WGBS
ATAC-seq
cell line
HepG2309
GM1287815
primary cell
pancreatic alpha cell134210
exocrine cell39
pancreatic beta cell131110
pancreatic endocrine cell23
pancreatic ductal cell137
tissue
liver541
islet of Langerhans28611
body of pancreas20
pancreas161
white adipose tissue12
in vitro differentiated cells
adipocyte53
pancreatic endoderm1841
hepatocyte15
definitive endodermal cell821
primitive gut cell821
stem cell
hESC31
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