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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
Target of assay
histone
3
histone modification
3
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
789
pancreas
685
liver
603
connective tissue
457
adipose tissue
425
epithelium
320
kidney
288
heart
163
vasculature
159
blood vessel
159
bone element
121
artery
97
brain
72
limb
59
musculature of body
57
eye
41
blood
41
bodily fluid
25
embryo
20
lung
19
nerve
18
ureter
16
skeleton
10
spleen
7
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
urinary bladder
Project
57
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
57
AMP-T2D consortium
files.file_type!
bed bedMethyl
month_released!
December, 2018
organ_slims!
urinary bladder
target.investigated_as!
histone
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
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