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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
34
DNase-seq
32
ChIP-seq
7
ATAC-seq
6
total RNA-seq
4
Hi-C
Assay category
41
DNA accessibility
32
DNA binding
6
Transcription
4
3D chromatin structure
Target of assay
31
histone
31
histone modification
20
broad histone mark
12
control
narrow histone mark
Date released
34
October, 2019
32
June, 2019
6
February, 2021
5
May, 2019
4
July, 2019
2
February, 2020
Available data
78
bam
61
bed narrowPeak
60
bigWig
54
bigBed narrowPeak
34
bed bed3+
34
bed broadPeak
34
bigBed broadPeak
6
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
83
Homo sapiens
Biosample type
83
tissue
Organ
867
pancreas
727
liver
648
connective tissue
477
adipose tissue
469
epithelium
345
heart
335
kidney
208
vasculature
blood vessel
167
brain
159
bone element
135
artery
106
limb
79
musculature of body
57
eye
41
blood
41
bodily fluid
35
nerve
29
embryo
20
lung
18
ureter
16
skeleton
16
vein
14
spleen
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
83
AMP
Genome assembly (visualization)
65
GRCh38
65
hg19
Lab
83
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
December, 2018
organ_slims!
blood vessel
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
83 results
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DNase-seq
ChIP-seq
ATAC-seq
total RNA-seq
Hi-C
tissue
tibial nerve
2
27
1
5
muscle of leg
13
5
muscle of arm
17
gastrocnemius medialis
1
4
distal epiphysis of femur
1
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