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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
10
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
33
DNA binding
10
Transcription
2
DNA accessibility
Target of assay
12
control
12
histone
12
histone modification
9
transcription factor
7
narrow histone mark
5
broad histone mark
3
other context
3
other post-translational modification
Date released
13
December, 2017
February, 2018
8
August, 2021
7
December, 2018
7
January, 2019
7
November, 2018
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
47
bam
38
fastq
35
bigWig
22
bed narrowPeak
13
bigBed narrowPeak
11
tsv
4
bed bed3+
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
47
Homo sapiens
Biosample type
23
tissue
16
in vitro differentiated cells
8
cell line
Organ
940
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
24
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
47
AMP
Genome assembly (visualization)
33
GRCh38
33
hg19
1
hg18
Lab
47
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
3
inconsistent control read length
files.file_type!
bed bedMethyl
month_released!
February, 2018
BIOSAMPLE
ASSAY
47 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
tissue
spleen
20
1
1
1
in vitro differentiated cells
pancreatic endoderm
9
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
cell line
H1-hESC
8
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