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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
66
ChIP-seq
36
DNase-seq
8
ATAC-seq
4
Hi-C
4
total RNA-seq
Assay category
66
DNA binding
44
DNA accessibility
4
3D chromatin structure
4
Transcription
Target of assay
49
histone
49
histone modification
34
broad histone mark
17
control
15
narrow histone mark
Date released
69
October, 2019
32
June, 2019
7
May, 2019
6
February, 2021
4
July, 2019
February, 2020
Available data
114
bam
92
bed narrowPeak
91
bigWig
84
bigBed narrowPeak
36
bed bed3+
36
bed broadPeak
36
bigBed broadPeak
4
tsv
bed bedMethyl
1
bigBed bedMethyl
Organism
118
Homo sapiens
Biosample type
118
tissue
Organ
939
pancreas
787
liver
679
connective tissue
518
epithelium
487
adipose tissue
382
heart
350
kidney
272
brain
231
vasculature
226
blood vessel
159
bone element
139
artery
118
limb
90
musculature of body
69
blood
69
bodily fluid
eye
42
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
stomach
1
urinary bladder
Project
118
AMP
Genome assembly (visualization)
96
hg19
95
GRCh38
Lab
118
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
February, 2020
organ_slims!
eye
ovary
BIOSAMPLE
ASSAY
118 results
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ChIP-seq
DNase-seq
ATAC-seq
Hi-C
total RNA-seq
tissue
tibial nerve
35
2
1
4
tibial artery
23
2
1
muscle of leg
7
13
muscle of arm
17
gastrocnemius medialis
4
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