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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
80
ChIP-seq
2
ATAC-seq
1
DNase-seq
1
pCHi-C
Assay category
80
DNA binding
3
DNA accessibility
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
34
December, 2018
25
January, 2019
22
November, 2018
January, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
84
bam
84
fastq
71
bigWig
68
bed narrowPeak
67
bigBed narrowPeak
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
1
tsv
Organism
84
Homo sapiens
Biosample type
61
cell line
23
tissue
Organ
932
pancreas
788
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
61
blood
61
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
84
AMP
Genome assembly (visualization)
69
hg19
68
GRCh38
Lab
84
AMP-T2D consortium
Audit category:
1
inconsistent control
files.file_type!
bed bedMethyl
month_released!
January, 2021
BIOSAMPLE
ASSAY
84 results
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ChIP-seq
ATAC-seq
DNase-seq
pCHi-C
cell line
GM12878
60
1
tissue
spleen
20
1
1
1
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