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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
215
ChIP-seq
17
total RNA-seq
4
ATAC-seq
4
small RNA-seq
3
Hi-C
3
single cell RNA-seq
2
DNase-seq
2
pCHi-C
1
FAIRE-seq
Assay category
215
DNA binding
24
Transcription
7
DNA accessibility
3
3D chromatin structure
Target of assay
187
histone
187
histone modification
117
narrow histone mark
70
broad histone mark
31
control
RNA binding protein
3
transcription factor
Date released
88
November, 2017
86
October, 2019
June, 2019
28
May, 2019
16
July, 2019
16
October, 2017
12
February, 2020
2
March, 2020
2
November, 2018
1
February, 2023
Available data
210
bam
189
bigWig
170
bed narrowPeak
118
tagAlign
94
bigBed narrowPeak
26
tsv
18
fastq
14
bed broadPeak
5
bed bed3+
5
bigBed broadPeak
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
1
tagAlign bed3+
Organism
251
Homo sapiens
Biosample type
239
tissue
12
primary cell
Organ
927
pancreas
728
liver
654
connective tissue
492
epithelium
483
adipose tissue
340
heart
267
kidney
251
brain
222
vasculature
220
blood vessel
159
bone element
138
artery
89
limb
59
blood
59
bodily fluid
53
eye
49
musculature of body
43
nerve
37
embryo
23
spleen
22
vein
20
lung
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
251
AMP
Genome assembly (visualization)
184
GRCh38
139
hg19
Lab
251
AMP-T2D consortium
Audit category:
3
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedMethyl
month_released!
June, 2019
organ_slims!
thymus
target.investigated_as!
RNA binding protein
BIOSAMPLE
ASSAY
251 results
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ChIP-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
DNase-seq
pCHi-C
FAIRE-seq
tissue
brain
20
1
1
2
layer of hippocampus
23
substantia nigra
16
1
temporal lobe
15
1
1
caudate nucleus
15
1
+ See 72 more…
primary cell
astrocyte of the cerebellum
2
1
brain microvascular endothelial cell
2
1
cerebellar granule cell
2
choroid plexus epithelial cell
2
Purkinje cell
1
+ See 1 more…
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