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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
32
DNase-seq
24
ChIP-seq
16
total RNA-seq
4
small RNA-seq
3
ATAC-seq
3
Hi-C
3
single cell RNA-seq
2
pCHi-C
1
FAIRE-seq
Assay category
36
DNA accessibility
24
DNA binding
23
Transcription
3
3D chromatin structure
Target of assay
110
histone
histone modification
67
broad histone mark
43
narrow histone mark
24
control
3
RNA binding protein
3
transcription factor
Date released
30
June, 2019
18
November, 2017
16
July, 2019
12
February, 2020
October, 2019
4
October, 2017
3
May, 2019
2
March, 2020
2
November, 2018
1
February, 2023
Available data
69
bam
55
bigWig
36
bed narrowPeak
36
bigBed narrowPeak
35
bed bed3+
35
bed broadPeak
35
bigBed broadPeak
25
tsv
12
tagAlign
11
fastq
3
hdf5
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3
Organism
88
Homo sapiens
Biosample type
71
tissue
17
primary cell
Organ
778
pancreas
683
liver
600
connective tissue
456
adipose tissue
411
epithelium
298
kidney
285
heart
159
bone element
149
vasculature
145
blood vessel
113
artery
88
brain
68
blood
68
bodily fluid
59
musculature of body
46
limb
38
eye
25
embryo
20
lung
18
ureter
17
spleen
16
skeleton
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
nerve
1
ovary
1
pericardium
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
1
vein
Project
88
AMP
Genome assembly (visualization)
48
GRCh38
44
hg19
Lab
88
AMP-T2D consortium
Audit category:
1
inconsistent ontology term
files.file_type!
bed bedMethyl
month_released!
October, 2019
target.investigated_as!
histone modification
BIOSAMPLE
ASSAY
88 results
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DNase-seq
ChIP-seq
total RNA-seq
small RNA-seq
ATAC-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain
14
3
1
frontal cortex
2
2
1
1
cerebellum (Hemisphere)
1
1
1
1
1
caudate nucleus
1
2
1
temporal lobe
2
1
1
+ See 23 more…
primary cell
astrocyte of the cerebellum
1
2
1
brain microvascular endothelial cell
1
2
1
choroid plexus epithelial cell
1
2
brain pericyte
1
1
cerebellar granule cell
2
+ See 2 more…
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