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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
15
ATAC-seq
15
ChIP-seq
5
total RNA-seq
3
single cell RNA-seq
2
RNA microarray
Assay category
15
DNA accessibility
15
DNA binding
8
Transcription
Target of assay
12
histone
12
histone modification
10
broad histone mark
3
control
2
narrow histone mark
Date released
715
February, 2021
406
November, 2017
405
August, 2017
399
May, 2021
341
May, 2020
319
August, 2021
314
October, 2019
218
June, 2019
205
February, 2023
200
May, 2022
168
July, 2018
120
May, 2019
94
December, 2017
85
July, 2019
81
November, 2018
80
April, 2019
76
October, 2018
73
September, 2018
March, 2020
61
November, 2019
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
25
February, 2020
23
October, 2017
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
26
bigWig
24
fastq
20
bam
14
tagAlign
12
bed narrowPeak
9
tsv
6
bigBed narrowPeak
4
bed broadPeak
Organism
40
Homo sapiens
Biosample type
26
tissue
12
primary cell
2
in vitro differentiated cells
Organ
16
brain
13
epithelium
12
pancreas
5
liver
3
kidney
1
adipose tissue
1
connective tissue
1
spleen
Project
33
AMP
7
HPAP
Genome assembly (visualization)
26
GRCh38
18
hg19
Lab
32
AMP-T2D consortium
7
Klaus Kaestner, Upenn
1
Stephen Parker, UMich
Audit category:
4
audit script error
2
inconsistent ontology term
Audit category:
4
missing controlled_by
files.file_type!
bed bedMethyl
month_released!
March, 2020
BIOSAMPLE
ASSAY
40 results
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Clear Filters
ATAC-seq
ChIP-seq
total RNA-seq
single cell RNA-seq
RNA microarray
tissue
brain
15
body of pancreas
4
cerebellum (Hemisphere)
1
islet of Langerhans
1
kidney
1
+ See 4 more…
primary cell
hepatocyte
5
pancreatic alpha cell
5
pancreatic beta cell
2
in vitro differentiated cells
cardiomyocytes (cardiac muscle cell)
2
See all biosamples
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