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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
39
total RNA-seq
18
small RNA-seq
6
Hi-C
4
ATAC-seq
3
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
60
Transcription
6
3D chromatin structure
6
DNA accessibility
3
DNA methylation
Target of assay
3
control
Date released
649
February, 2021
405
August, 2017
403
November, 2017
399
May, 2021
341
May, 2020
313
August, 2021
267
October, 2019
213
June, 2019
200
May, 2022
170
February, 2023
168
July, 2018
94
December, 2017
81
November, 2018
80
April, 2019
76
October, 2018
75
July, 2019
73
September, 2018
70
May, 2019
61
November, 2019
March, 2020
59
September, 2020
49
April, 2018
47
September, 2023
40
May, 2024
39
February, 2018
35
December, 2018
30
January, 2019
23
October, 2017
22
February, 2020
19
April, 2020
16
January, 2021
16
November, 2020
15
May, 2023
11
September, 2017
10
December, 2019
8
January, 2018
7
August, 2020
5
March, 2019
5
March, 2023
4
August, 2018
4
October, 2022
3
June, 2018
1
August, 2022
Available data
75
bigWig
73
bam
60
tsv
bed bedMethyl
22
bigBed bedMethyl
5
bed narrowPeak
2
bed bed3+
2
bigBed narrowPeak
2
hdf5
Organism
75
Homo sapiens
Biosample type
57
tissue
18
primary cell
Organ
17
connective tissue
17
heart
16
brain
12
adipose tissue
blood vessel
10
vasculature
9
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
75
AMP
Genome assembly (visualization)
67
hg19
64
GRCh38
Lab
75
AMP-T2D consortium
files.file_type!
bed bedMethyl
month_released!
March, 2020
organ_slims!
blood vessel
BIOSAMPLE
ASSAY
75 results
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total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
omental fat pad
4
1
right lobe of liver
2
2
1
subcutaneous adipose tissue
4
1
body of pancreas
2
2
+ See 15 more…
primary cell
cerebellar granule cell
2
mesenchymal stem cell of adipose
1
1
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
+ See 10 more…
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