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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
35
total RNA-seq
15
small RNA-seq
8
Hi-C
6
ATAC-seq
4
WGBS
3
single cell RNA-seq
2
FAIRE-seq
Assay category
53
Transcription
8
3D chromatin structure
8
DNA accessibility
4
DNA methylation
Target of assay
3
control
Date released
329
February, 2021
318
November, 2017
314
May, 2020
298
August, 2021
259
May, 2021
204
February, 2023
200
May, 2022
198
June, 2019
184
August, 2017
168
July, 2018
117
October, 2019
80
November, 2018
73
July, 2019
63
December, 2017
60
March, 2020
59
September, 2020
50
November, 2019
49
April, 2018
47
September, 2023
41
September, 2018
35
December, 2018
28
May, 2019
23
February, 2018
23
February, 2020
23
January, 2019
23
October, 2018
20
April, 2019
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
11
September, 2017
10
December, 2019
10
October, 2017
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
5
May, 2024
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
73
bigWig
70
bam
53
tsv
bed bedMethyl
23
bigBed bedMethyl
7
bed narrowPeak
4
bed bed3+
4
hdf5
2
bigBed narrowPeak
Organism
73
Homo sapiens
Biosample type
53
tissue
20
primary cell
Organ
17
connective tissue
17
heart
16
brain
adipose tissue
10
blood vessel
10
vasculature
9
liver
8
musculature of body
7
epithelium
7
kidney
4
limb
4
pancreas
3
artery
1
pericardium
Project
73
AMP
Genome assembly (visualization)
64
hg19
59
GRCh38
Lab
73
AMP-T2D consortium
files.file_type!
bed bedMethyl
organ_slims!
adipose tissue
target.investigated_as!
histone
BIOSAMPLE
ASSAY
73 results
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total RNA-seq
small RNA-seq
Hi-C
ATAC-seq
WGBS
single cell RNA-seq
FAIRE-seq
tissue
heart left ventricle
2
2
2
right lobe of liver
2
2
1
body of pancreas
2
2
gastrocnemius medialis
4
frontal cortex
1
1
1
+ See 17 more…
primary cell
cerebellar granule cell
2
skeletal muscle satellite cell
1
1
Purkinje cell
1
astrocyte of the cerebellum
1
brain microvascular endothelial cell
1
+ See 13 more…
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