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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
70
ChIP-seq
8
DNase-seq
1
FAIRE-seq
1
single cell RNA-seq
Assay category
70
DNA binding
9
DNA accessibility
1
Transcription
Target of assay
64
transcription factor
21
RNA binding protein
16
recombinant protein
7
chromatin remodeller
6
control
3
other context
3
other post-translational modification
Date released
356
November, 2017
341
May, 2020
329
February, 2021
323
May, 2021
309
August, 2021
261
August, 2017
258
October, 2019
209
June, 2019
204
February, 2023
200
May, 2022
168
July, 2018
80
November, 2018
79
December, 2017
73
July, 2019
63
March, 2020
62
May, 2019
59
September, 2020
56
September, 2018
54
November, 2019
49
April, 2018
47
September, 2023
43
April, 2019
35
December, 2018
34
October, 2018
31
February, 2018
26
January, 2019
23
February, 2020
20
May, 2024
19
April, 2020
16
January, 2021
16
November, 2020
14
May, 2023
12
October, 2017
11
September, 2017
10
December, 2019
7
August, 2020
7
January, 2018
5
March, 2019
5
March, 2023
4
October, 2022
3
August, 2018
3
June, 2018
1
August, 2022
Available data
87
fastq
86
bam
79
bigWig
72
bed narrowPeak
72
bigBed narrowPeak
8
bed bed3+
8
bed broadPeak
8
bigBed broadPeak
bed bedMethyl
7
bigBed bedMethyl
1
csv
Organism
80
Homo sapiens
Biosample type
60
cell line
19
tissue
1
primary cell
Organ
52
liver
15
blood
15
bodily fluid
7
spleen
3
pancreas
2
brain
adipose tissue
1
connective tissue
Project
80
AMP
Genome assembly (visualization)
71
GRCh38
70
hg19
Lab
80
AMP-T2D consortium
Audit category:
3
missing controlled_by
Audit category:
5
inconsistent control read length
4
inconsistent control run_type
files.file_type!
bed bedMethyl
organ_slims!
adipose tissue
target.investigated_as!
broad histone mark
BIOSAMPLE
ASSAY
80 results
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Clear Filters
ChIP-seq
DNase-seq
FAIRE-seq
single cell RNA-seq
cell line
HepG2
45
GM12878
15
tissue
spleen
6
1
liver
4
2
body of pancreas
2
brain
2
pancreas
1
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primary cell
pancreatic cell
1
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