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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
80
ChIP-seq
62
total RNA-seq
14
ATAC-seq
8
snATAC-seq
2
pCHi-C
1
DNase-seq
Assay category
80
DNA binding
62
Transcription
23
DNA accessibility
Target of assay
57
transcription factor
14
control
10
RNA binding protein
10
chromatin remodeller
7
histone
7
histone modification
4
broad histone mark
3
narrow histone mark
3
other context
3
other post-translational modification
Date released
150
February, 2021
34
December, 2018
25
January, 2019
22
November, 2018
8
February, 2023
8
January, 2021
1
January, 2018
1
March, 2020
1
May, 2021
1
October, 2017
Available data
150
bam
129
bigWig
88
txt
84
fastq
76
bed narrowPeak
67
bigBed narrowPeak
59
tsv
4
bed bed3
bed bedMethyl
2
bigBed bedMethyl
1
bed bed3+
1
bed broadPeak
1
bigBed broadPeak
Organism
251
Homo sapiens
Biosample type
181
tissue
61
cell line
9
primary cell
Organ
940
pancreas
788
liver
681
connective tissue
epithelium
489
adipose tissue
385
heart
350
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
242
AMP
9
T1D
Genome assembly (visualization)
139
hg19
134
GRCh38
Lab
242
AMP-T2D consortium
9
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
1
inconsistent control
files.file_type!
bed bedMethyl
organ_slims!
epithelium
BIOSAMPLE
ASSAY
251 results
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RNA microarray
ChIP-seq
total RNA-seq
ATAC-seq
snATAC-seq
pCHi-C
DNase-seq
tissue
bone element
84
bone tissue
58
spleen
20
1
1
1
acetabular part of hip bone
1
1
ilium
1
1
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cell line
GM12878
60
1
primary cell
peripheral blood mononuclear cell
8
megakaryocyte
1
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