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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
84
RNA microarray
62
total RNA-seq
13
ATAC-seq
2
ChIP-seq
1
pCHi-C
Assay category
62
Transcription
13
DNA accessibility
2
DNA binding
Target of assay
2
histone
2
histone modification
2
narrow histone mark
Date released
150
February, 2021
8
February, 2023
3
October, 2019
1
May, 2021
Available data
88
txt
67
bam
59
bigWig
58
tsv
9
bed narrowPeak
4
bed bed3
1
tagAlign
Organism
162
Homo sapiens
Biosample type
161
tissue
1
primary cell
Organ
940
pancreas
706
liver
681
connective tissue
518
epithelium
489
adipose tissue
385
heart
343
kidney
284
brain
234
vasculature
229
blood vessel
159
bone element
141
artery
121
limb
92
musculature of body
69
blood
69
bodily fluid
60
eye
43
nerve
37
embryo
23
spleen
22
vein
20
lung
18
ureter
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
161
AMP
1
T1D
Genome assembly (visualization)
71
hg19
67
GRCh38
Lab
161
AMP-T2D consortium
1
Kyle Gaulton, UCSD
Audit category:
84
inconsistent ontology term
files.file_type!
bed bedMethyl
target.investigated_as!
recombinant protein
BIOSAMPLE
ASSAY
162 results
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RNA microarray
total RNA-seq
ATAC-seq
ChIP-seq
pCHi-C
tissue
bone element
84
bone tissue
58
acetabular part of hip bone
1
1
ilium
1
1
ischium
1
1
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primary cell
megakaryocyte
1
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