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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 218ChIP-seq
  • 32DNase-seq
  • 17total RNA-seq
  • 4ATAC-seq
  • 4small RNA-seq
  • 3Hi-C
  • 3single cell RNA-seq
  • 2pCHi-C
  • 1FAIRE-seq
Assay category
  • 218DNA binding
  • 37DNA accessibility
  • 24Transcription
  • 33D chromatin structure
Target of assay
  • 187histone
  • 187histone modification
  • 117narrow histone mark
  • 70broad histone mark
  • 31control
  • 3RNA binding protein
  • 3transcription factor
Date released
  • 91November, 2017
  • 86October, 2019
  • 30June, 2019
  • 28May, 2019
  • 16July, 2019
  • 16October, 2017
  • 12February, 2020
  • 2March, 2020
  • 2November, 2018
  • 1February, 2023
Available data
  • 243bam
  • 222bigWig
  • 203bed narrowPeak
  • 127bigBed narrowPeak
  • 118tagAlign
  • 47bed broadPeak
  • 38bigBed broadPeak
  • 35bed bed3+
  • 26tsv
  • 21fastq
  • 3hdf5
  • bed bedMethyl
  • 2bigBed bedMethyl
  • 1bed bed3
  • 1tagAlign bed3+
Organism
  • 284Homo sapiens
Biosample type
  • 264tissue
  • 20primary cell
Organ
  • 940pancreas
  • 788liver
  • 681connective tissue
  • 518epithelium
  • 489adipose tissue
  • 385heart
  • 350kidney
  • 284brain
  • 234vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 121limb
  • 92musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 23spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 284AMP
Genome assembly (visualization)
  • 217GRCh38
  • 162hg19
Lab
  • 284AMP-T2D consortium
Audit category:
  • 3inconsistent ontology term
Audit category:
  • 4missing controlled_by
files.file_type!
  • bed bedMethyl
BIOSAMPLE
ASSAY

284 results

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Clear Filters
ChIP-seq
DNase-seq
total RNA-seq
ATAC-seq
small RNA-seq
Hi-C
single cell RNA-seq
pCHi-C
FAIRE-seq
tissue
brain201411
layer of hippocampus23
caudate nucleus1511
substantia nigra161
temporal lobe1511
primary cell
astrocyte of the cerebellum311
brain microvascular endothelial cell311
choroid plexus epithelial cell31
brain pericyte11
cerebellar granule cell2
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