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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
33
ChIP-seq
14
total RNA-seq
1
ATAC-seq
1
DNase-seq
1
GRO-seq
1
pCHi-C
Assay category
33
DNA binding
14
Transcription
2
DNA accessibility
Target of assay
18
histone
18
histone modification
15
control
10
narrow histone mark
transcription factor
8
broad histone mark
3
other context
3
other post-translational modification
Date released
13
February, 2018
10
December, 2017
8
August, 2021
7
January, 2019
4
December, 2018
4
November, 2018
2
May, 2021
1
January, 2018
1
March, 2020
1
October, 2017
Available data
51
bam
42
fastq
36
bigWig
19
bed narrowPeak
15
tsv
7
bigBed narrowPeak
4
bed bed3+
bed bedMethyl
2
bigBed bedMethyl
1
bed broadPeak
1
bigBed broadPeak
Organism
51
Homo sapiens
Biosample type
26
in vitro differentiated cells
17
tissue
8
cell line
Organ
921
pancreas
641
connective tissue
509
epithelium
472
adipose tissue
450
liver
368
heart
340
kidney
281
brain
225
vasculature
221
blood vessel
159
bone element
136
artery
121
limb
92
musculature of body
59
eye
43
nerve
34
embryo
22
vein
20
lung
18
blood
18
bodily fluid
18
ureter
17
spleen
16
skeleton
5
gonad
5
ovary
2
intestine
2
pituitary gland
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
large intestine
1
lymph node
1
mammary gland
1
pericardium
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
51
AMP
Genome assembly (visualization)
34
GRCh38
34
hg19
1
hg18
Lab
51
AMP-T2D consortium
Audit category:
6
inconsistent ontology term
Audit category:
1
missing controlled_by
Audit category:
2
inconsistent control read length
files.file_type!
bed bedMethyl
target.investigated_as!
transcription factor
BIOSAMPLE
ASSAY
51 results
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ChIP-seq
total RNA-seq
ATAC-seq
DNase-seq
GRO-seq
pCHi-C
in vitro differentiated cells
pancreatic endoderm
15
4
1
Hepatic endoderm
4
mesodermal cell (lineage marker-negative)
1
mesodermal cell (pacemaker intermediate)
1
tissue
spleen
14
1
1
1
cell line
H1-hESC
8
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