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Schema
Citing CMDGA
Experiment Matrix
Click or enter search terms to filter the experiments included in the matrix.
Assay
28
ATAC-seq
19
total RNA-seq
4
DNase-seq
4
pCHi-C
2
ChIP-seq
Assay category
32
DNA accessibility
19
Transcription
2
DNA binding
Target of assay
3
histone
3
histone modification
narrow histone mark
1
RNA binding protein
1
control
1
transcription factor
Date released
31
February, 2023
19
October, 2019
6
June, 2019
1
February, 2020
Available data
32
bed narrowPeak
6
bam
5
bigBed narrowPeak
5
bigWig
5
tsv
4
bed bed3+
4
bed broadPeak
4
bigBed broadPeak
bed bedMethyl
1
bigBed bedMethyl
Organism
57
Homo sapiens
Biosample type
54
tissue
3
primary cell
Organ
867
pancreas
728
liver
648
connective tissue
477
adipose tissue
469
epithelium
345
heart
335
kidney
208
vasculature
204
blood vessel
167
brain
159
bone element
135
artery
106
limb
musculature of body
68
blood
68
bodily fluid
57
eye
35
nerve
29
embryo
21
spleen
20
lung
18
ureter
16
skeleton
16
vein
2
intestine
2
thymus
1
adrenal gland
1
bone marrow
1
esophagus
1
gonad
1
large intestine
1
mammary gland
1
ovary
1
pericardium
1
pituitary gland
1
skin of body
1
small intestine
1
spinal cord
1
stomach
1
urinary bladder
Project
57
AMP
Genome assembly (visualization)
32
hg19
5
GRCh38
Lab
57
AMP-T2D consortium
files.file_type!
bed bedMethyl
organ_slims!
musculature of body
target.investigated_as!
narrow histone mark
BIOSAMPLE
ASSAY
57 results
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ATAC-seq
total RNA-seq
DNase-seq
pCHi-C
ChIP-seq
tissue
retina
15
3
3
islet of Langerhans
1
14
4
pigmented layer of retina
12
2
primary cell
retinal pigment epithelial cell
1
2
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