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Experiment Matrix

Click or enter search terms to filter the experiments included in the matrix.

Assay
  • 39ChIP-seq
  • 33DNase-seq
  • 6Hi-C
  • 6total RNA-seq
  • 2RRBS
  • 2small RNA-seq
  • 1ATAC-seq
  • 1pCHi-C
  • 1single cell RNA-seq
  • 1snATAC-seq
Assay category
  • 39DNA binding
  • 35DNA accessibility
  • 9Transcription
  • 63D chromatin structure
  • 2DNA methylation
Target of assay
  • 33histone
  • 33histone modification
  • 20broad histone mark
  • 13narrow histone mark
  • 6control
Date released
  • 43June, 2019
  • 24August, 2017
  • 8July, 2019
  • 7May, 2019
  • 5March, 2020
  • 2February, 2020
  • 2May, 2022
  • 1January, 2018
Available data
  • 68bigWig
  • 60bed narrowPeak
  • 57bam
  • 47bigBed narrowPeak
  • 46bed broadPeak
  • 34bed bed3+
  • 33bigBed broadPeak
  • 15tagAlign
  • 9tsv
  • bed bedMethyl
  • 4bigBed bedMethyl
  • 2bedpe bed3+
  • 2fastq
  • 2hic
  • 1txt
Organism
  • 92Homo sapiens
Biosample type
  • 79tissue
  • 13primary cell
Organ
  • 940pancreas
  • 788liver
  • 681connective tissue
  • 518epithelium
  • 489adipose tissue
  • 385heart
  • 350kidney
  • 284brain
  • 234vasculature
  • 229blood vessel
  • 159bone element
  • 141artery
  • 121limb
  • 92musculature of body
  • 69blood
  • 69bodily fluid
  • 60eye
  • 43nerve
  • 37embryo
  • 23spleen
  • 22vein
  • 20lung
  • 18ureter
  • 16skeleton
  • 5gonad
  • 5ovary
  • 2intestine
  • 2pituitary gland
  • 2thymus
  • 1adrenal gland
  • 1bone marrow
  • 1esophagus
  • 1large intestine
  • 1lymph node
  • 1mammary gland
  • 1pericardium
  • 1skin of body
  • 1small intestine
  • 1spinal cord
  • 1stomach
  • 1urinary bladder
Project
  • 92AMP
Genome assembly (visualization)
  • 70hg19
  • 52GRCh38
Lab
  • 92AMP-T2D consortium
Audit category:
  • 9inconsistent ontology term
  • 1audit script error
files.file_type!
  • bed bedMethyl
BIOSAMPLE
ASSAY

92 results

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Clear Filters
ChIP-seq
DNase-seq
Hi-C
total RNA-seq
RRBS
small RNA-seq
ATAC-seq
pCHi-C
single cell RNA-seq
snATAC-seq
tissue
skeletal muscle tissue22121111
muscle of leg713
muscle of arm17
gastrocnemius medialis41
psoas muscle221
primary cell
skeletal muscle satellite cell811
skeletal muscle cell21
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